| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_0384 |
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| Symbol | |
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| ID | 3908822 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 424683 |
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| End bp | 426362 |
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| Gene Length | 1680 bp |
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| Protein Length | 559 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637882270 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_484006 |
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| Protein GI | 86747510 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCACGCA TCGCCATCAT TCGCAAGAAA GCGAAGCTTC GGGGGTTACT CGGAATCCGC
GCGCGGCTGG TGATTCTGGC GCTGATTCTG GTGTGCCCGC TGATGTTCGA CCGGGTCCGC
CTGCTCGAAC ACACCCGCAG CAGTGAGATC GCCGCGGTCG CCGCCACCGC AGCGACGCTG
GCGCAGCGCG CCGCCGACGC CCAGCGCGAA GTGATCTCCT CGGTCGAGGC GGTGCTGAAA
TCCGCCGCCT ACATCCATGC CGCAGCCGCC CAGGTCGACC GCAGCTGCAG CATTCTGCGC
GCCAGTCTGC GGGTCGATCT GCCGTCGATC CGGATGCTGT CGATCGCGGA TGCGCGCGGC
ATCATTCATT GCTCCACCGC GGCGATGTTC GTCGGCGCCG ACGTCAGCGA GCGCGCCTAT
TTCCGCCGGG CGCTGGAGAG CCATGATTTC GTCGTCAGCG ATTTCCTGAT CGGGGCGCAG
AGCGGCAAGG GCACCATTCT GGCGGCCTAT CCGGTGTCGG CGGTGGACGC CGGCGAACAG
GCCGTGATGA TCGCCGGAAT GAACCTCGAC TGGCTGTCGG ACATCATGGC CAATCTCGCC
GACCGCGCCG GCGTCAGCGT CGCGCTGATC GACGGCGAGG GCACCGTGCT CGCCACCCCG
CCCGACCAGC GCAGCAAGGT CGGCCAGAAA CTCGACCAGG CCACGCTCGA CTTCGCCCTC
GGCGCCAATC CGCCGCAGCG GGAGGCGTTG GCAGCTCTGG ACGGCACCGG ACGGAGGCTG
TCGGTCTCGC GGATTCCGGG CACCAATTCG CGGCTGCTGG TGACGCTCGA CGAGAGCGTG
GTCGCGGCCG CCATCAACCG CGAGATCCGC ACCGCCTATC TGCAACTGGC GCTGGTGTGC
GTGTTCGTGC TGCTCGGCGC GCTGATCGCC GCCGAACGGC TGATCGTGCG GCCGATCTCG
ATGCTGACCT CGACTGCCAA GCGATTCGCC GAAGGCGACT GGTCGGCGCG CGCCGCGCGC
GCCCGGCTGC CGTCGGAATT CGTGCCGCTG GCGCGCGCCT TCAACGCGAT GGCCGCGCAA
CTCGGCCAGC GCGAGCGCGA GCTGGTCGCG ATCAACAACA ACCTCACCGT GATGGCGTCG
ATGGACATGC TGAGCGGTCT GGCCAACCGG CGCGGCTTCC AGAGCCGGCT GGACTTCGAA
TGGGCGCGCG GCCAGCAGAC CGGCCATTGC CTGGCGCTGC TGATGCTCGA CGTCGACCAT
TTCAAGCCGT TCAACGACAG CTATGGCCAT CCGGAGGGCG ACGCCTGCCT GTCGCGGATC
GGCGAGGCGC TGGCGGGCGT GGCCGACGAG ACCGGCGGCT TCGCCGCGCG CTACGGCGGC
GAGGAGTTCT GCCTCCTGTT GCCGAATACC GATGCGGCGG CCGCGCGCGA TGTCGGCGAA
TTGGTTCGGG CCACGATCGA GCGACTTGGG GTGCCGCATC GCACCAGCGA GTTTCAGCGC
GTCACCGTCA GCGTCGGCGT CGCGACGGCT CTGCCGGTCG ACACCGCGGC GCCGCGCGAA
CTGCTCGAGG CCGCCGACGC CGCGCTCTAC GCCGCCAAAC ACGGCGGCCG CAACACGGTC
GCCGAACACG GCCTGGTCCG CGGCGCCGAT GCGCCCGCGC CAATGGCGAT GGCGGGCTGA
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| Protein sequence | MSRIAIIRKK AKLRGLLGIR ARLVILALIL VCPLMFDRVR LLEHTRSSEI AAVAATAATL
AQRAADAQRE VISSVEAVLK SAAYIHAAAA QVDRSCSILR ASLRVDLPSI RMLSIADARG
IIHCSTAAMF VGADVSERAY FRRALESHDF VVSDFLIGAQ SGKGTILAAY PVSAVDAGEQ
AVMIAGMNLD WLSDIMANLA DRAGVSVALI DGEGTVLATP PDQRSKVGQK LDQATLDFAL
GANPPQREAL AALDGTGRRL SVSRIPGTNS RLLVTLDESV VAAAINREIR TAYLQLALVC
VFVLLGALIA AERLIVRPIS MLTSTAKRFA EGDWSARAAR ARLPSEFVPL ARAFNAMAAQ
LGQRERELVA INNNLTVMAS MDMLSGLANR RGFQSRLDFE WARGQQTGHC LALLMLDVDH
FKPFNDSYGH PEGDACLSRI GEALAGVADE TGGFAARYGG EEFCLLLPNT DAAAARDVGE
LVRATIERLG VPHRTSEFQR VTVSVGVATA LPVDTAAPRE LLEAADAALY AAKHGGRNTV
AEHGLVRGAD APAPMAMAG
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