| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_0088 |
|---|
| Symbol | |
|---|
| ID | 3908730 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 94073 |
|---|
| End bp | 94651 |
|---|
| Gene Length | 579 bp |
|---|
| Protein Length | 192 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637881969 |
|---|
| Product | SNase-like nuclease |
|---|
| Protein accession | YP_483711 |
|---|
| Protein GI | 86747215 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1525] Micrococcal nuclease (thermonuclease) homologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.227871 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCCAC TCTTCAGAAC GAACCCGGTA CGGATCGCGC GACTGCCCTG GCGTGGGCGG
CTGAGGTCGA TCTGGCCGTG GGTGTTCGTG CTCGGCGTCG CGGCCGGAAT GATGCTGCCG
GCGCGGCACT GGGTGCAGTG GCCCTGGGCT GAGCCCGATT CGCAGGCGCT CAGGAACGAC
AGCGAGACGG TGTGGCGGCG CGCCGGTAAC CCGGCGGTGC GGCACCCGGT CGACGTGCTC
TATATCATCG ACGGCGACAC GTTCGAGGCG CGGGTGCATC TGTGGCCGGG AACGGATCTC
GCGACCCGCG TTCGGCTGCG CGGCATCGAC GCGCCGGAGC TGAAGGCGCA GTGCGCGCAG
GAACTCAAGC TTGCCGAAGC CGCGACCGGC GCCCTGCGCG ACCTGCTGCG GCAGGGTGAG
GTGGCGATCT ACAATATCGG CCCCGACAAA TATCAGGGCC GCGTCGTCGC CGACGTCGCG
ACCAAACGCA CCCCCAGCGT CTCCGCCGCG CTGCTGGAAG CCGGCTACGC CCGGGCTTAC
GGCAGCGGGC GTCGCGAGGG CTGGTGCGGC GGGCGGTGA
|
|---|
| Protein sequence | MSPLFRTNPV RIARLPWRGR LRSIWPWVFV LGVAAGMMLP ARHWVQWPWA EPDSQALRND
SETVWRRAGN PAVRHPVDVL YIIDGDTFEA RVHLWPGTDL ATRVRLRGID APELKAQCAQ
ELKLAEAATG ALRDLLRQGE VAIYNIGPDK YQGRVVADVA TKRTPSVSAA LLEAGYARAY
GSGRREGWCG GR
|
|---|
| |