| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_0050 |
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| Symbol | |
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| ID | 3908136 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 51434 |
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| End bp | 53662 |
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| Gene Length | 2229 bp |
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| Protein Length | 742 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637881931 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_483673 |
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| Protein GI | 86747177 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGCAAA TCCGGCTGAA GACAAGCAAG ACATCGAAAA GATGCACGGT CGCGCGTAAG
CCAAAGCCAA GCCGCTCCGC GACGAAAGGC CCCAAGCCAT TGCCGCGTCC GAAGCGGCCG
TCGCGCGCCG CGGCGGTCGC CGATCGCGAG CGCGCCGTCG CGGTCGCGCT GGACGAGGCC
CGCAAGTCGC ACGAGCGGCT GCGCGAGGCG ATCGACATCC TGCCGCAGGG CATCGTGTTT
CTCGACTCCG AGGGCCGCTA CATCCTCTGG AACAAGCGCT ACGCCGAGAT CTACAAGGCC
AGCGCCGATC TGTTCAAACC CGGCGCGCGG ATCGAGGACA CGATGCGTGT CGGCGTCGCG
CGCGGCGACT ATCCGGAGGC GGTCGGCCAC GAGGAGGAAT GGATCGCCGA GCGGATGCGG
CGGCTGTTCG ACCCGGGGCA CAGCCACGAG CAGGTGCTCG CCGACGGTCG CTGCATCCGG
ATCGAGGAAC GCACCACCTC CGACGGCGGC GTGATCGGCC TGCGCGTCGA CATCACCGAG
CTGAAGCAGC GCGAGGCGTC GTTCCGGCTG ATGTTCGAGG GCAATCCGGT GCCGATGATC
GTGTGCTCGC TGAAGGACGA GCGCATCGTC GCGGTCAACG ACGCCGCGGT GCTGCATTAC
GGCTATTCGC CCGCCGAATT CGCCGGGTTG ACGATCCGTC GCCTGCAGGC GTTCGGGACC
GAGTTGCCAT GGTCCGGCGA GCAGACCAAC GAGGAGCGCG CGGCGCGGAC CTGGACGCAC
GTCAAGGCCG ACGGCTCGCT GATCGATCTG GCGGTCTATG CGCGCCAGCT CACCTACAAT
GGCGAGCCGG CCGTGCTGCT GGCGCTGATG GACATCACCG AACGCAAGCG CGCCGAGATG
CGGCTCGCCT TCATGGCGCA TCACGACGGC CTGACCAAGC TGCCGAACCG CAGCCTGCTG
CGCAAGCGGC TCGACGAATT GCTGGCCAAG ACCCGGCGCA CCGGCGACAA GATCGCGGTG
CTGTTCATCG GCGTCGATCA TTTCAAGGCG GTGAACGACA CGCTCGGCCA CGCCATCGGC
GACAAGCTGC TGCGCGGCAT CGCGCGGCGG CTGCGTTCGA CGCTGCGCGA GGAGGATCCG
CTGGCGCGGC TCAACTCCGA CGAATTCGCG GTGATCCAGA CCGGGATCAA ACGACCCGAA
GACGTCACGC TGCTGGCCAA GCGGCTGCTG AATGCGATCG CCGAACCGTA TCTGCTCGAG
GGCCATTCGG TGGTCGCCGG CGCCAGCATC GGCATCGCGG TCGCGCCGCT CGACGGCGAC
GATTCCGAGA AGCTCTTGAT GAACGCCGGC ATGGCGCTGT CGCGTGCCAA GACGGATTCG
CGTGGCAGCT TCAGCTTCTT CGAGCCGGAC ATGGACGCCC GCGCGCAGTC CCGCCGCAAG
ATCGAGACCG AGCTGCGCGC GGCGTTGCGT CACGAGGTGC TGCGGCCGTA CTACCAGCCG
CTGATCGCTC TGAGCGGCGG CGGCGTCACC GGCTGCGAGG CGCTGGTGCG CTGGCCGCAT
CCGGAGCGCG GCATGGTCTC GCCTGGCGAA TTCATCCCGG TCGCCGAGGA TACCGGCCTG
ATCAACGCGA TCGGCGCGCA GGTGCTGCGC GCGGCCTGCC GGGACGCCGC GCGCTGGCCC
GGCGACATCA GCGTCGCGGT CAATCTGTCG CCGCTGCAGT TCCGCGTCGG CAATCTGATG
GCGACGGTGA TGGATGCGCT GAAGCAATCC GGCCTGCCGC CGCGCCGGCT CGAACTCGAA
ATCACCGAGA CGCTGCTGCT GGAGAAGAGC AGCCAGGTGA TCGCGACGCT GCACGCGCTG
CGCGCGCTCG GCGTCCGGAT CTCGATGGAC GATTTCGGCA CCGGCTATTC GTCGCTCAGC
TATCTGCGCA GCTTTCCGTT CGACAAGATC AAGATCGACC AGTCGTTCGT CCGCGGCGTC
AGCGACAATC GCGAAGCCCA GGCGATCGTC CGCGCCATCA TCAGCCTCGG CATGGGGCTC
GGCGTCACCA TCACCGCCGA AGGCGTCGAG ACCGAAGCCG AACTGAACTG GCTGCGCGCG
GAGGGCTGCC ACGAGGCGCA GGGCTTCCTG TTCAGCCCGG CGCGGCCGAA CGACGAGCTC
AGGGACCTGC TCGATCGGCA GGGCACGGCC GGCGGTGCGT TCCCGGTCAG CGCGTCGCGC
GTCGCGTAG
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| Protein sequence | MPQIRLKTSK TSKRCTVARK PKPSRSATKG PKPLPRPKRP SRAAAVADRE RAVAVALDEA
RKSHERLREA IDILPQGIVF LDSEGRYILW NKRYAEIYKA SADLFKPGAR IEDTMRVGVA
RGDYPEAVGH EEEWIAERMR RLFDPGHSHE QVLADGRCIR IEERTTSDGG VIGLRVDITE
LKQREASFRL MFEGNPVPMI VCSLKDERIV AVNDAAVLHY GYSPAEFAGL TIRRLQAFGT
ELPWSGEQTN EERAARTWTH VKADGSLIDL AVYARQLTYN GEPAVLLALM DITERKRAEM
RLAFMAHHDG LTKLPNRSLL RKRLDELLAK TRRTGDKIAV LFIGVDHFKA VNDTLGHAIG
DKLLRGIARR LRSTLREEDP LARLNSDEFA VIQTGIKRPE DVTLLAKRLL NAIAEPYLLE
GHSVVAGASI GIAVAPLDGD DSEKLLMNAG MALSRAKTDS RGSFSFFEPD MDARAQSRRK
IETELRAALR HEVLRPYYQP LIALSGGGVT GCEALVRWPH PERGMVSPGE FIPVAEDTGL
INAIGAQVLR AACRDAARWP GDISVAVNLS PLQFRVGNLM ATVMDALKQS GLPPRRLELE
ITETLLLEKS SQVIATLHAL RALGVRISMD DFGTGYSSLS YLRSFPFDKI KIDQSFVRGV
SDNREAQAIV RAIISLGMGL GVTITAEGVE TEAELNWLRA EGCHEAQGFL FSPARPNDEL
RDLLDRQGTA GGAFPVSASR VA
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