| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_0041 |
|---|
| Symbol | |
|---|
| ID | 3908127 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 40187 |
|---|
| End bp | 42394 |
|---|
| Gene Length | 2208 bp |
|---|
| Protein Length | 735 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637881922 |
|---|
| Product | penicillin-binding protein 1A |
|---|
| Protein accession | YP_483664 |
|---|
| Protein GI | 86747168 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
|---|
| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGTGG GCAAGAAGAA AGCCGGCGAA CGGCGGGAGC CGAAATTCGG CTTGGCCGAC
TCGCTGTCCG GCCTGCGCCT CAACCCGCAG GACCGGATCA GCGTGGCCGA CGACGACCGG
CCGAAAAAGC CCAGAGCTGC CAAAGCGCAA CCCGCCAGAT CCTCGGGCGG CGGCGGGTCG
CGCAAGCCGC GCGGAAAATC CCGCAGCAAA GGCGGACTGC GCCGCCTCGT CACCCGCACC
GTGTACTGGA CCGCCGTCGC CGGCATCTGG GCGGTGCTGG CGGTGGTCGG GCTGATGGTC
TGGGTCGGCG CGCATCTGCC GCCGATCCAG TCGCTGGAAA TTCCGAAGCG ACCGCCGACC
ATTACCATCG TCGCCGCCGA TGGCAGTCAG CTCGCGGTGC GCGGCGAGAT GGCCGGCACC
AATGTGGCGC TGAAGGAATT GCCGCCTTAT CTGCCGAAGG CTTTCATCGC CATCGAGGAC
CGGCGCTTCT ATCAGCATTT CGGCGTCGAT CCGATCGGCA TCGGCCGCGC CGCGATCGCC
AATGTGCTGC ATCGCGGCGT GTCGCAGGGC GGCTCGACGC TCACCCAGCA GCTCGCCAAG
AACCTGTTCC TGACCCAGGA CCGCACCCTG ATGCGCAAGC TGCAGGAGGT CGAACTGGCG
CTGTGGCTGG AGCGCAAGCA TTCCAAGGCG GAGATTCTCG AACTGTATCT CAACCGGGTG
TATTTCGGCT CCGGCGCCTA CGGCATCGAG GCGGCGTCGC AGAAATATTT CGGCAAGTCG
GCCAAGGACG TCACCCTGGT CGAGGCGGCG ATGCTCGCCG GCCTGGTCAA ATCGCCGTCG
CGGCTGGCGC CGAACCGCAA TCCGGAGGGC GCCGAGAAGC GCGCCCAGCT GGTGCTCGCC
GCAATGGCCG ACGCCGATTT CATCACCGAC AAGCAGGCCC GCACCGCGAT CGCCAACCCG
GTCTACACCG TCAAGCCGAC CGGCGCCGGC ACCATCAACT ACGTCGCCGA CTGGATCGGC
GAGGTGCTCG ACGACCTGGT CGGACAGATC GATCAGTCGA TCGTGGTGGA GACCTCGATC
GATCCGAAGC TGCAGGCGGA AGCCGAAGCC GCGATCATCG ACGAACTCGC CGCCAAGAGC
GTCAAGTTCA AGGTCTCGCA AGGCGCGCTG GTGGCGATGA CGCCGGACGG CGCGGTGCGG
GCGATGATCG GCGGCCGCAA CTACGCCGAG AGCCAGTTCA ACCGCGCCGT CACCGCCAAG
CGGCAGCCGG GCTCGGCATT CAAGCCGTTC GTGTATCTCA CGGCGATCGA GGCCGGGCTG
ACGCCGGAGA CGATCCGGCA GGACGCGCCG CTCGACGTCA AGGGCTGGCG GCCGGAGAAT
TACACCCATG AGTACTTCGG CTCGGTGACG CTGACCCAGG CGCTGTCGAT GTCGCTCAAC
ACCGTGGCGG TGCGGCTCGG GCTCGAGGTC GGGCCGAAGA ACGTGGTGCG CACCGCGCAC
CGGCTCGGCA TCGCCTCCAA GCTCGAGGCC AACGCCTCGA TCGCGCTCGG CACCTCGGAA
GTGTCGGTGC TGGAGCTGGT CGGCGCCTAT GCGCCTTTCG CCAATGGCGG GCTGGCGGCG
TCGCCGCATG TCGTCGACCG GATCCGCACC GCGAGCGGCA ACAAGCTGCT GTATGCCCGG
CCGAACGATC CGCCGAACCG CGTCGTCGAT GCCCGTGCGG TGGCGATGAT GAACACCATG
ATGCGGGAGA CGCTGCAGTC CGGCACCGCG AAGAAGGCCG ACGTTCCGGG CTGGACCGCC
GCCGGCAAGA CCGGCACCAG CCAGGATTTC CGCGACGCCT GGTTCATCGG CTACACCGGG
ACGCTGGTCA CCGGCGTCTG GCTCGGCAAT GACGACAATT CGCCGACCCG GAAGGCGACC
GGCGGCGGCC TGCCGGTCGA CGTCTGGACC CGCTTCATGC GCGAGGCGCT GAAAGGCACC
GCGCCGCAGC CGCTACCCGG CGGCGGCTGG AGCGGCGGCC CGCTGGTCGC AGGCAGCCCC
TCCGCCGGCG GCACCATCGC GCAGGCCGGC CCGCGCGGCG AAACCCAGAT CGTCAACATC
CCTGCGGCTT CCGGCGCCGC TCGCCCGCAG CCCGCCCGCG CCAATGTCCG CCCCGAAGCC
GACAGCGGCC TCGACGGCTG GCTGATGGAC CGGCTGTTCG GGCGATAG
|
|---|
| Protein sequence | MAVGKKKAGE RREPKFGLAD SLSGLRLNPQ DRISVADDDR PKKPRAAKAQ PARSSGGGGS
RKPRGKSRSK GGLRRLVTRT VYWTAVAGIW AVLAVVGLMV WVGAHLPPIQ SLEIPKRPPT
ITIVAADGSQ LAVRGEMAGT NVALKELPPY LPKAFIAIED RRFYQHFGVD PIGIGRAAIA
NVLHRGVSQG GSTLTQQLAK NLFLTQDRTL MRKLQEVELA LWLERKHSKA EILELYLNRV
YFGSGAYGIE AASQKYFGKS AKDVTLVEAA MLAGLVKSPS RLAPNRNPEG AEKRAQLVLA
AMADADFITD KQARTAIANP VYTVKPTGAG TINYVADWIG EVLDDLVGQI DQSIVVETSI
DPKLQAEAEA AIIDELAAKS VKFKVSQGAL VAMTPDGAVR AMIGGRNYAE SQFNRAVTAK
RQPGSAFKPF VYLTAIEAGL TPETIRQDAP LDVKGWRPEN YTHEYFGSVT LTQALSMSLN
TVAVRLGLEV GPKNVVRTAH RLGIASKLEA NASIALGTSE VSVLELVGAY APFANGGLAA
SPHVVDRIRT ASGNKLLYAR PNDPPNRVVD ARAVAMMNTM MRETLQSGTA KKADVPGWTA
AGKTGTSQDF RDAWFIGYTG TLVTGVWLGN DDNSPTRKAT GGGLPVDVWT RFMREALKGT
APQPLPGGGW SGGPLVAGSP SAGGTIAQAG PRGETQIVNI PAASGAARPQ PARANVRPEA
DSGLDGWLMD RLFGR
|
|---|
| |