Gene RPB_0030 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_0030 
SymbolargJ 
ID3909713 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp27958 
End bp29199 
Gene Length1242 bp 
Protein Length413 aa 
Translation table11 
GC content68% 
IMG OID637881911 
Productbifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein 
Protein accessionYP_483653 
Protein GI86747157 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1364] N-acetylglutamate synthase (N-acetylornithine aminotransferase) 
TIGRFAM ID[TIGR00120] glutamate N-acetyltransferase/amino-acid acetyltransferase 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.708351 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCAGCA AAGTCTCTCC GCTCGCGCCC ACCAACGTTC CCACGCTGCC GGAGCTCGCC 
GGCGTCCGCC TCGCCACCGC CGCGGCCGGC ATCCGCTACA AGAACCGCAC CGACGTGCTG
CTGGTGGCGC TGGACCCGGG CACCAGTGTC GCGGGCGTGT TCACCACCTC GAAATGTCCG
TCGGCGCCGG TCGAATGGTG CCGCGACAAC CTCAAGGGCG GCACCGCGCG GGTGCTGGTG
GTCAATTCCG GCAATGCCAA CGCCTTTACC GGCAAGACCG GCCGCAAGGC GACGACGCTG
ACCGCCTCGA TCGCCGCGAA GGCGACCGGC TGCAAGCCGG CCGAAGTGTT CCTCGCCTCC
ACCGGGGTGA TCGGTGAGCC GCTCGACGCC ACCAAGTTCG AGGGCGTGCT CGGCACGCTC
GCCGAGACCG CGCAGCCGGG TGGCTGGCTG GATGCCGCGA AAGCGATCAT GACCACCGAC
ACCTTCCCCA AGGTCGCGAC CAAGACCGTG AAGCTCGGCA AGGCCAAGGT CACGATCAAC
GGCATGGCCA AGGGCGCCGG CATGATCGCG CCCGACATGG CGACGATGCT GTCGTTCATC
TTCACCGACG CGCCGCTGTC GGCGTCGTGC CTGCAGGCGC TGCTCAAGGC CGGCGTCGCC
GACACCTTCA ATGCGGTGAC GATCGACGGC GACACCTCGA CAAGCGACAC GCTGCTGGCA
TTCGCCACCG GGGCGGCGGC AAAGAACGGC GCGCCAAAAA TTTCGCGGGC CTCCGATCCG
CGGCTGACCG CGTTCGTCAA GGCCTTCAAC GCGGTGCTGG CCGATCTCGC CGAGCAGGTG
GCGCGCGACG GCGAGGGCGC CCGCAAGCTG GTCGAGATCA TCGTCGACGG CGCCGTCTCC
AAGGCGAGCG CACGAAAGAT CGCGCTGTCG ATCGCCAATT CGCCGCTGGT CAAGACCGCG
ATCGCCGGCG AGGACGCCAA TTGGGGCCGC GTGGTGATGG CGGTCGGCAA GGCCGGCGAG
CCGGCCGATC GCGACAAGCT CTCGATTGCG TTCAACGGCA TTCGCGTGGC GAAAGCCGGC
GCGCGCGACC CGTCCTACGA CGAGAAGGAA GTCTCGGCGG CGATGAAGCA GCCGGAAATC
CAGATCAAGG TCGGGCTGGG TCTGGGCAAA GGCCGCGACC GGGTGCTGAC CTGCGACCTC
ACCAAGGAAT ACGTCGCGAT CAACGGCGAC TACCGGTCGT GA
 
Protein sequence
MSSKVSPLAP TNVPTLPELA GVRLATAAAG IRYKNRTDVL LVALDPGTSV AGVFTTSKCP 
SAPVEWCRDN LKGGTARVLV VNSGNANAFT GKTGRKATTL TASIAAKATG CKPAEVFLAS
TGVIGEPLDA TKFEGVLGTL AETAQPGGWL DAAKAIMTTD TFPKVATKTV KLGKAKVTIN
GMAKGAGMIA PDMATMLSFI FTDAPLSASC LQALLKAGVA DTFNAVTIDG DTSTSDTLLA
FATGAAAKNG APKISRASDP RLTAFVKAFN AVLADLAEQV ARDGEGARKL VEIIVDGAVS
KASARKIALS IANSPLVKTA IAGEDANWGR VVMAVGKAGE PADRDKLSIA FNGIRVAKAG
ARDPSYDEKE VSAAMKQPEI QIKVGLGLGK GRDRVLTCDL TKEYVAINGD YRS