Gene Francci3_4501 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFrancci3_4501 
Symbol 
ID3907477 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. CcI3 
KingdomBacteria 
Replicon accessionNC_007777 
Strand
Start bp5372857 
End bp5373825 
Gene Length969 bp 
Protein Length322 aa 
Translation table11 
GC content72% 
IMG OID637881833 
ProductNUDIX hydrolase 
Protein accessionYP_483576 
Protein GI86743176 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTGCCCGT CGTCCTGGCG CCGCGGCGGC TGGAGCCGAA GACTGGACGG CATGAAGTCG 
TCGGCTGATC CCTGGGATAG GCCGGTACGG GTCGTAGGTG CCGCCGGTGG GGTGCTGTGG
CGGCCCACGC GGGACGGGCG GCAGATCGCG GTCGTGCACC GGCCACGGTA CGACGACTGG
TCCCTGCCCA AGGGCAAGCT GCGTCGGCGG GAACATCCGT TGCTCGGTGC GTTGCGGGAG
GTCGAGGAGG AGACTGGTTA CCGGGCCTGG CTCGGGCCCC CGCTCGGCGA GTACCGCTAC
CTGACGGACG GCGGCAGGAC GGTGAAGACG GTCCGGTACT GGGCGATGCA GGCCCGTTCC
GGCACGTTCG TCCCCACCCG GGAGGTGGAC AGGCTTGCCT GGCTGGCGAA GGGGGATGCG
GCGCGCCGGG TCAGCTACGA CACCGACCGC CACGTCCTCG CCGAGTTTGG TCGGCTGCCG
GCGCCGACGG CCGCACTCGT CGTCATCCGC CACGCTCGGG CCGCCCACCA TCGGCGCTGG
GACGGGCCTG ACCGGCTACG CCCGCTCGAT GAGCGCGGCC GGGCCCAGGC GAACGCACTG
GTGCCGCTGC TGACCAGCCT GGGGATTCGC CTGTTGATCA GCGCCGACCT GCCCTGCTGC
ACCGCCACGC TCGCCCCGTA CGCGCGCGCG GCCGGGCTCG CCGTCGAACC GGAGCCGGCG
CTGGCGGACA CCGGCTATCC CGGATCGGAG GCGAGGGTGG TCGCTACCTT GATGGGGCTC
GCGGCGTCCG GGACTCCGAC GGCGATCTGT AGCCAGCGCA CCATCGTTGC CGACCTGATC
CGACGGCTCC TGGACGGCTG GTGCTGGCCG GTCCCGGACC AGCTCGGGGT ACGGGAGGGC
GGCTTCTGGC TGCTGCACTG CCCTCCCGGC AGGCTGGTCG CAGCGGAACG TCACGATCCC
GTAGCATGA
 
Protein sequence
MCPSSWRRGG WSRRLDGMKS SADPWDRPVR VVGAAGGVLW RPTRDGRQIA VVHRPRYDDW 
SLPKGKLRRR EHPLLGALRE VEEETGYRAW LGPPLGEYRY LTDGGRTVKT VRYWAMQARS
GTFVPTREVD RLAWLAKGDA ARRVSYDTDR HVLAEFGRLP APTAALVVIR HARAAHHRRW
DGPDRLRPLD ERGRAQANAL VPLLTSLGIR LLISADLPCC TATLAPYARA AGLAVEPEPA
LADTGYPGSE ARVVATLMGL AASGTPTAIC SQRTIVADLI RRLLDGWCWP VPDQLGVREG
GFWLLHCPPG RLVAAERHDP VA