| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_4471 |
|---|
| Symbol | |
|---|
| ID | 3907447 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 5342159 |
|---|
| End bp | 5342608 |
|---|
| Gene Length | 450 bp |
|---|
| Protein Length | 149 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 637881803 |
|---|
| Product | alkylhydroperoxidase |
|---|
| Protein accession | YP_483546 |
|---|
| Protein GI | 86743146 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG0599] Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit |
|---|
| TIGRFAM ID | [TIGR00778] alkylhydroperoxidase AhpD family core domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTCCG GCAGCCCGGT CCAAGACGAG ATCCGCCCGC ATGCCCGCGA ACTGCGTCGG
CTGATCCCGG ACGTATACCG GGGGCTCGGC ACCCTGGGCG ACGCGGCTCT CCGTGACGGC
GCCCTGGACA GCCGCACGAA GGAGCTGATC GCACTGGCGC TCGCCGTGAG CACCCAGTGC
GACGGTTGCA TCGAGGCACA CGCTCACGGC GCCGTCCGGC AGGGTGCGAC CTGCCAGGAG
GCGGCCGAGG CCATCGGGGT GGCACTGCTG ATGAACGGCG GACCGGCGTC GGTCTACGGC
CCGCGCGCGT TCGCCGCCTT CAGGCGTTTC CGCGCCGAGC GGCACGAGGC GGGGGACGGT
ACGGCGCCGC TCGGGCACGT AACCCCGGCC TCGCCGGGAC ACGCTCCATC AACCGCCCAG
GTTCAGCCCC CCGGCAACAC CGACGTCTGA
|
|---|
| Protein sequence | MSSGSPVQDE IRPHARELRR LIPDVYRGLG TLGDAALRDG ALDSRTKELI ALALAVSTQC
DGCIEAHAHG AVRQGATCQE AAEAIGVALL MNGGPASVYG PRAFAAFRRF RAERHEAGDG
TAPLGHVTPA SPGHAPSTAQ VQPPGNTDV
|
|---|
| |