Gene Francci3_4460 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFrancci3_4460 
Symbol 
ID3907436 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. CcI3 
KingdomBacteria 
Replicon accessionNC_007777 
Strand
Start bp5332594 
End bp5333562 
Gene Length969 bp 
Protein Length322 aa 
Translation table11 
GC content69% 
IMG OID637881792 
Productpolyhydroxybutyrate depolymerase 
Protein accessionYP_483535 
Protein GI86743135 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG3509] Poly(3-hydroxybutyrate) depolymerase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.403398 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCATCC GCTTCCCCCG CACGTCTTGG TTGCTCGCCG TGTTCGTCGC TGGCGCGGTC 
GCCCTCACCG GCTGCTCGGG GCCGCTTCGG CGCTCCGCGG CAGGCCCGGC AGAGCCCGCC
AGCACCGCGA CGGCTTCTAC GCCGGCCGCT GTCCCGGTCG GATCGTCGGT ACGGTCGATC
AACGTCGGCG GCGCCACCCG CGCCTACCGG CTGTACCGGC CGCCGACTCT GCCCGCGCGG
GCGCCGCTCG TCGTCATGAT CCACGGCGGT TTCGGTGGCG CGGAGCAGGC CGAGAACTCC
TACGGCTGGG ACGCCGAGGC CGACCGCGGC CATTTTCTCG TCGCCTATCC CGAAGGGCAG
AACCATGCCT GGTCCGTCGG CGGCGGTTGT TGCGGAAAGC CCGGTGCGAC CGGCGTGGAT
GATGTCGCCT TCATCACTGG CATGGTAGCC GCCATCCAAG CCGCCGTACC GGTCGACACC
GCCCGTATCT ACGCCACCGG AATCTCCAAC GGCGGCATGA TGGACTACCG GTTGGCCTGC
GACACCACCA TTTTCGCCGC GATCGGACCC GATTCGGCGA CCCTGCTCGG CACCTGCCCC
GCACCGCGGC CAATCTCCGT CATCGCCATT CACGGCACCG CGGACCACAC CGTACGCTAC
TACGGCGGCG AGGGTGACGG GGTCGCAAAA ATCAACGGAC CGGCCGTCCC GTTCGTGAAC
GCGATGTGGC GTACCGCCGA TCATTGTGCC ACCCCGGCCA CAACCACTAC GGAAAGCGTC
ACCACCTTTA TCGCCACCTG CCCGCAGGGA CGGGCCGTGG AACTGGTCAC CATTGCCGGC
GCGGGCCACC AGTGGCCCGG CGGTGCCCGC CACCCGACGG CCGAGCGAAT CCTGCATCTC
GACCCGCCGT CAACCGCCCT GAATGCCACC GCGACCATCT GGGCCTTCTT CACCCATCAG
GCAAGGTGA
 
Protein sequence
MIIRFPRTSW LLAVFVAGAV ALTGCSGPLR RSAAGPAEPA STATASTPAA VPVGSSVRSI 
NVGGATRAYR LYRPPTLPAR APLVVMIHGG FGGAEQAENS YGWDAEADRG HFLVAYPEGQ
NHAWSVGGGC CGKPGATGVD DVAFITGMVA AIQAAVPVDT ARIYATGISN GGMMDYRLAC
DTTIFAAIGP DSATLLGTCP APRPISVIAI HGTADHTVRY YGGEGDGVAK INGPAVPFVN
AMWRTADHCA TPATTTTESV TTFIATCPQG RAVELVTIAG AGHQWPGGAR HPTAERILHL
DPPSTALNAT ATIWAFFTHQ AR