| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_4453 |
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| Symbol | |
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| ID | 3907429 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | + |
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| Start bp | 5322971 |
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| End bp | 5325640 |
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| Gene Length | 2670 bp |
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| Protein Length | 889 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637881785 |
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| Product | RND efflux transporter |
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| Protein accession | YP_483528 |
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| Protein GI | 86743128 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1033] Predicted exporters of the RND superfamily |
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| TIGRFAM ID | [TIGR00921] The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGACGC CTTCCCCCTC CACCGACGAT CCAGCCGATC ATCCCGGCCG GCCCGAACAC
CGGTCGGAGC CAGGCCGCAC CTCGGAACCG GAGCACGGGT CGGGCCCGGA CCGCCGGTCC
GGGCCATCGG CGGCACTCGC CCGTATGGTC AGTACGGTCA GTCGGCGCTC GGGCATCGTC
GCCGTCGTGG CGCTGCTCGT CACCGCCGCC CTGGGGTTCG GAACCACCCG GCTGGAATTC
ACCACCGGCC AGGACAACTA TCTGAACCCC GACTCCCAGG TTGCCCGGGA CAACGTCGCC
TACCAGTCCC TCTTCGGCGG CCAGGCGATG GTCACGCTGT TCACCCTGGA CAAGGGCGAA
CGACTCGAGG ACCTATTCAC CAAGCGCAAC ATCAGCCAGT TCCGGGAGTT GCAGGCCAGC
CTCGACGCCG ATGACCGGAT CGAATCGGTG ATCACCCCGC TCACGGCGCT GGAGTTCACG
AACAACCTGG TCACGAGCCC GGACGGCAAT CCCGTCAACA GCCCCGCCGG GAAGATCCTG
CTCGGTGCCC AGCGCCGCGA TCCGGATCCG GTCTCCGCCC AGCGGCGCCT CGCCGACTCC
GTCACGACAC TGCGGCGGAT GCAGGCGATC CCGGTGGCCG AGCGGGTCTA CGACAACCCG
GCCTGGGTCT CCTTCCTGCT CCGCGACAAC ACGGGTGCCA TCCGTAAGTC GATCAAGCCG
TTCTTCCCGA CCGAATCCAC CAGCCAGATG GTCACCCGAC TGCGGGGCAA CGCCTCCCTC
ACGACCGAGG GCCAGGCCGC GACCCTGGCC GAGAAGGCCG CGTCCGAACG CATGTTCGAT
AATGCGACAA CGATGTCGAC CGGGGCGCCC GCGCTGCTGC GCGACCTCAA CGACTACCTG
CGCGGCGGGT TCGTCACCCT CGGGGGCATC TCCCTGGCAC TGATGGCCGG CCTGCTGCTC
GTCGCCTTCG CGGTGCGCTG GCGGCTGCTC CCGCTCGGCG TCGTCGCCGT CGGCCTCATC
TGGGCGTTCG GCCTCGCCGG CTACGCGGGT GTCCCGCTGT CGGTGGTGAC CATCTCCGGT
CTGCCGGTGC TGCTCGGCGT CGGCATCGAC TTCGCCGTCC AGCTCCACAG CCGGGTGGAG
GAGGAGGCCC AACTGGCCCG GGCCGGCCAT CCCGTCACCG CGGCCCTGGC CGGGCTGCTG
CCCGCGCTGA GTGTCGCCAC CGTCGCCGCG GTGCTGTCCT TCCTCGCGCT GGAGTTCAGC
GACGTCCCGA TGATCCGGGA CTTCGGCACG CTGCTCGCCC TGGGCCTGCC GGTGATCGTC
ATCGCCACGA TCCTGTTCCT CACCGCCTCG TTGGGCCTGC GGGAACGTCG CCGGCCGACC
CCCCCGAAGG ACTACACCCA CGGCCCGCTG GGTCGGACGG TGATCACCCT GGGGTCCCTG
CCACGGATCA CCGCGCTCCC GCTCGTCGCC GTGTCCGTCG CGGTCTTCGC CGTCGGGATC
GTCACCGACG GCACACTGAA GATCCAGACC GATCCGGAGA AATGGGTCGA CCAGCAGGGT
CAGGTCATCA AGAACATCAA CACGCTGCGC GCGAGCACCG GATCCGCCAG CGAGCTGGGC
ATCTACGTCC AGTCACCGAA CGTCTTCGAC GACGCCACCG TCGCCTTCCT CGCCGAGTTC
GCGAACACCC GGCTCGCGAA GGACCCGGCC GACCTGCTGA CCGCGTCGAG CCTCGTCACG
ACCATCAGCT TCATGATGGA GGTGCCGAAC ACGACGGTCG TCCTGCCGAC GGGTCAGGAC
GTCCGGCTCG GCTACGCCGC GGCACCGCCC GACCTCCAGC GCGCCACGGT GAACCTGGCC
CACAACGCGC TCAACCTCGT CTTCCGTACC GGATCGGGCT CGTTGGAACG GCAGGCCGCA
ATCGTCGACG ACATCCGGGA CACGGTCCAT CCGCCGCAAG GGGTACGCGC CACCCCGTCG
GGCCTCGTCG TGGTCGGCAC CGGGCTGCTG GAGAACTTCA CGAAGAACCG GACCCAGCTG
ACCTACTTCG CGCTGGTCGG CGTCCTGCTC ATGCTGCTGG TCTGGCACCG CAGCATCGTC
CGGGCGGTCC TGTCGCTGGT GCCGGTGCTG ATCGCGGTCG GGCTCAGCTC CATGATCGCC
TGGCTGGTCG GCGTCGATCT CAGCCCGCTC ACCGCGGTCG GCGGCCCGCT CGTCATCGCG
CTGGGCAGCG AGTTCACCAC CCTGCTCGTG CTTCGCCACC TGGAAGAGCG TCGACGCGGC
CTGACGCCGA AGGAGGCCGT CGACCAGACC GCAGCCCGCA CCGGACGCGC CTTCGTGGTC
TCCGCGCTCG CCGCCGTGAT CGGGGTCGCC GTCCTGGCCT TCAGCTCCCT ACCGCTGCTG
CGTGACTTCG GTCTGCTGGT CGCCCTCAAC GTCGCCATCG CCCTGCTGTC CGCGCTGGTC
GTCCTCCCAC CCCTGTTGAT CTGGGCGGAC GAACGCGGCT GGGTGCACCA GCCGCGCCAG
GACGACCCGG GCCCGGCGGT CGACAGAACC GGACCGGGTC TTCGTCAACA CGGCGACATG
TGGGACGCTC AAGAAACCCG TTCCAAGGCC GGCGCATCAC GGCCGCGGCC GATGGCGGGT
GGAAACCGGG ACGAGACATC CGCCGTATAG
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| Protein sequence | MSTPSPSTDD PADHPGRPEH RSEPGRTSEP EHGSGPDRRS GPSAALARMV STVSRRSGIV
AVVALLVTAA LGFGTTRLEF TTGQDNYLNP DSQVARDNVA YQSLFGGQAM VTLFTLDKGE
RLEDLFTKRN ISQFRELQAS LDADDRIESV ITPLTALEFT NNLVTSPDGN PVNSPAGKIL
LGAQRRDPDP VSAQRRLADS VTTLRRMQAI PVAERVYDNP AWVSFLLRDN TGAIRKSIKP
FFPTESTSQM VTRLRGNASL TTEGQAATLA EKAASERMFD NATTMSTGAP ALLRDLNDYL
RGGFVTLGGI SLALMAGLLL VAFAVRWRLL PLGVVAVGLI WAFGLAGYAG VPLSVVTISG
LPVLLGVGID FAVQLHSRVE EEAQLARAGH PVTAALAGLL PALSVATVAA VLSFLALEFS
DVPMIRDFGT LLALGLPVIV IATILFLTAS LGLRERRRPT PPKDYTHGPL GRTVITLGSL
PRITALPLVA VSVAVFAVGI VTDGTLKIQT DPEKWVDQQG QVIKNINTLR ASTGSASELG
IYVQSPNVFD DATVAFLAEF ANTRLAKDPA DLLTASSLVT TISFMMEVPN TTVVLPTGQD
VRLGYAAAPP DLQRATVNLA HNALNLVFRT GSGSLERQAA IVDDIRDTVH PPQGVRATPS
GLVVVGTGLL ENFTKNRTQL TYFALVGVLL MLLVWHRSIV RAVLSLVPVL IAVGLSSMIA
WLVGVDLSPL TAVGGPLVIA LGSEFTTLLV LRHLEERRRG LTPKEAVDQT AARTGRAFVV
SALAAVIGVA VLAFSSLPLL RDFGLLVALN VAIALLSALV VLPPLLIWAD ERGWVHQPRQ
DDPGPAVDRT GPGLRQHGDM WDAQETRSKA GASRPRPMAG GNRDETSAV
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