| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_4443 |
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| Symbol | |
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| ID | 3907419 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | - |
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| Start bp | 5310576 |
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| End bp | 5311403 |
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| Gene Length | 828 bp |
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| Protein Length | 275 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637881775 |
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| Product | rhomboid-like protein |
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| Protein accession | YP_483518 |
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| Protein GI | 86743118 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.6785 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.502259 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCCCGC ACTGCTACCG TCATCCGGAC CGGGAGACCT ACGTCTCCTG CCAGCGCTGC
GGCCGGCCGA TCTGCCCCGA CTGCATGCGC CCGGCGGCGG TCGGCTTCCA CTGCCCGGAG
GAGGGCGACC GCTCCACGCC GCAGCGCCGA ACGCGGACCA CACTCGGCGG CCCGGCTCAG
GTCGCCCGGC AGGGGCTGGT CACCCAGATC CTCATCGGCC TGTGCGTCGC CGCCTACATC
CTGCAGGGCG CGCCCGGGCT GACCGGCCGC GGCACCTTCA ACCGCTTCAC CGGCGACTTC
GCCATGATCG GAATCCGGAT CGCGGCGGAC GACCAGTACT ATCGGCTGCT GACCGCGGCC
TTCCTGCACG CCGGCGTGCT CCACATCCTG TTCAATATGT ACGCGCTGTA TCTGCTCGGG
TTTCAGCTCG AGGCGATCCT CGGGCGGGCT CGGTACCTCG CGCTGTTCGT GGCGGGGGCG
CTCGGTGGGA ACACCCTGAG TTACGTGCTC GGTGACGGGT TCACCGTGTC GGTCGGCGCG
TCCACCGCGA TCTTCGCGTT CTTTGCCGCC TACTACATCA TCGCCCGCCG CCTGCGGGTG
GACTCCCGGC AGATCCTCAT CGTGCTCGGG ATCAACCTCG CCATCACCTT CTCGTTCAGC
AACATCGACA AATGGGGGCA TCTCGGTGGG CTGGCTGTCG GTGCCATCAT CGGTCTGATC
TACGCCTACG TCCCGCCCCG CCGGGTGCTG CTCCAGGCGG GCGGGGTCGC CGCCGTGCTC
GCGTTGCTGT TCGCCGCCGC GATCATCAAG TCGTCGACAC TGGTGTAG
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| Protein sequence | MIPHCYRHPD RETYVSCQRC GRPICPDCMR PAAVGFHCPE EGDRSTPQRR TRTTLGGPAQ
VARQGLVTQI LIGLCVAAYI LQGAPGLTGR GTFNRFTGDF AMIGIRIAAD DQYYRLLTAA
FLHAGVLHIL FNMYALYLLG FQLEAILGRA RYLALFVAGA LGGNTLSYVL GDGFTVSVGA
STAIFAFFAA YYIIARRLRV DSRQILIVLG INLAITFSFS NIDKWGHLGG LAVGAIIGLI
YAYVPPRRVL LQAGGVAAVL ALLFAAAIIK SSTLV
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