| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_4394 |
|---|
| Symbol | |
|---|
| ID | 3907368 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 5251234 |
|---|
| End bp | 5252082 |
|---|
| Gene Length | 849 bp |
|---|
| Protein Length | 282 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 637881725 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_483469 |
|---|
| Protein GI | 86743069 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1877] Trehalose-6-phosphatase |
|---|
| TIGRFAM ID | [TIGR00685] trehalose-phosphatase
[TIGR01484] HAD-superfamily hydrolase, subfamily IIB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.553746 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCGAAT CCGCGCCGAA CAGCCCACCC GCCCCCCGCA CACCCGCCGG GGGCGCTGGA
CTCGCCGCCC TGCTCACCGC GCCCGAACGC GCCCTGATCG CCCTCGACTA CGACGGCACC
CTCGCGCCGA TCGTCCCGCG GCCGTCGGAC GCCGTCCCGG CGCCGGGGGC GATGGATGCG
CTGCGCCGGA TCTCCCATGA GATCGGCACC CTCGCCATCA TCACCGGACG GCCGGTGGAC
TCTCTGCTGG AACTGACCGG GCTGGAGAAG ATCCCCGACT TCGGGAACCT GATCATCCTT
GGCCAGTACG GACTGCAACG CTGGGACTCG GGCAGCCGCG CGATCAGCAG TCCCGAGCCG
CTGCCCGGTG TCGCCGCGGT CCGCGCGGCG CTGCCCGAAC TGCTCCGCGA CGCCCCGGTC
GGCACCGCCG TCGAGGACAA GCACCAGGCG CTGGTGGTAC ACGTGCGGCG CACCGCCGAT
CCGGACTCGG CGCTCGCCGC GCTCACGCCG GCGTTGACGG CCCTCGCCGA AGACCATGGG
ATGGAGGCGG CACCGGGCAA GCGAGTGCTG GAGCTGCGTC CGCCCGGGCA CGACAAGGGC
GGTGCGCTGC GCAGGCTCAT CGCGGCCTGC CAGGCGCGCT CGGTGCTGGT CGCCGGGGAC
GACTACGGCG ATCTGCCGGC ATTCGAGGCC GTCGACGAGC TACGGGCGGG CGGGCTGCCC
GGTATCACCG TGTGCAGCGA CAGCCCGGAG GTCCCGGACG TGATCCGCGA ACGCGCCGAC
CTGGTCGTGG GCGGGCCCCC CGGGATGGTC GCCCTGCTGG AGGTGCTGGT CGAGCGGCTC
AGCGGCTGA
|
|---|
| Protein sequence | MTESAPNSPP APRTPAGGAG LAALLTAPER ALIALDYDGT LAPIVPRPSD AVPAPGAMDA
LRRISHEIGT LAIITGRPVD SLLELTGLEK IPDFGNLIIL GQYGLQRWDS GSRAISSPEP
LPGVAAVRAA LPELLRDAPV GTAVEDKHQA LVVHVRRTAD PDSALAALTP ALTALAEDHG
MEAAPGKRVL ELRPPGHDKG GALRRLIAAC QARSVLVAGD DYGDLPAFEA VDELRAGGLP
GITVCSDSPE VPDVIRERAD LVVGGPPGMV ALLEVLVERL SG
|
|---|
| |