| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_4301 |
|---|
| Symbol | |
|---|
| ID | 3907269 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 5132342 |
|---|
| End bp | 5134756 |
|---|
| Gene Length | 2415 bp |
|---|
| Protein Length | 804 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 637881628 |
|---|
| Product | DEAD/DEAH box helicase-like |
|---|
| Protein accession | YP_483376 |
|---|
| Protein GI | 86742976 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1205] Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGGGG GGTTCGTCCG GCTGAGGGGC GCCGTGACCG CGTCGAGACG CATATCCTCG
ATCGTCGTGG GCTCGCCGGT GGATGTCGAC GGCGCGGACA CGGTCCTTGC CGGGCTGCGC
CGCGACGTGC GACGAGCGCG GTGCATGACG CACATCGAGC GTGTCCCGGC TCGGGACGGC
TGCCCGGCGC CATGGCCGGA CTGGATCGAT CCGGTCCTGC GGGGACGGTG GACGGCCGCC
GGGATCGCGA GCCCCTGGAG CCACCAGGCG GCTGCCGCCG AGGCCGCATA CGCCGGGCGC
AGCGTGGTGC TGGCGACCGG CACGGCCTCG GGTAAGTCGC TTGGCTATCT GATGCCGGTG
CTGTCCCGGC TGCTCGCCGA GCCCGGTGCC CGGGCACTCT ACCTGGCGCC CACGAAGGCG
CTGGCCCACG ACCAGCTCAG AGCCGTGCGG TCGCTGCGGC TCACCGGTAT CCGGGCCGCC
GCGTTCGACG GGGACACGCC GGCGGCCGAA CGGGACTGGG TCCGGGCGCA TGCCGGCCTG
GTCCTGACCA ACCCCGACAT GCTCCACCGT GGCATCCTGC CCTTCCACCG GCGGTGGACC
CAGTTCCTGC GCGGCCTGCG TTACGTCGTC GTCGACGAGT GCCACGGCTA CCGAGGGGTG
TTCGGCGCAC ACGTGGCCGC GGTGATCCGC CGGCTGCGGC GGATCTGCGC GCGCTACGGG
ACCGATCCGG TGTTCCTGCT CGCGTCCGCG ACCGTCGCCG ATCCCGGGGT CTCGGCCGCA
CGGCTCACCG GCGTGGAGGT CGAGGTGGTC GACGTTGACG GATCTCCGCG GGGGCCACTG
GACTTCGTGC TCTACGAACC TCCGCTGCTC ACGACCGGGC AGAGCTCGCC GGACCGGGAG
GACCCGACCT CCGCGCCCGG CCCGGGCGAG AACGGCGCCC CCGTCCGCCG GTCGGTGACC
GCCGAGTCCG CGGACCTGCT GACGGACCTC GTCGCGGACG GTGTGCGCAC CCTGGTCTTT
GTCCGCTCGC GACGGGCCGC CGAGGTGGTG GCGGTGACCG CCCGCCGCGA ACTCGGTCGG
ATCGCCGCAG ACCTCGCCGA CCGGGTGGCG GCGTATCGGG CCGGCTACCT GCCGGAGGAG
CGACGGGCCC TGGAGGAGGA TCTCCGCTCG GGCGCCCTGC TCGGGGCGGC CGCGACGTCG
GCACTCGAGC TCGGGGTGGA CATCAGCGGG CTGGACGCCA CCGTCACCGC CGGTTTTCCC
GGCACGCTCG CCTCGCTCTG GCAGCAGGCC GGACGCGCCG GGCGGGATGG CCGGCGATCG
CTGGCCGTGC TGGTCGCCCG GGACGATCCG CTTGACACCT ACCTGGTGCA TCATCCCGAA
GCCGTCTTCG GACGGCCGGT GGAGGCCAGC GTCTTCGACC CCGACAATCC CTACGTGCTC
GCTCCGCACC TGGAGTGCGC CGCGGCCGAG CTGGCGCTGA CCGAGGCGGA TCTGGCGTTG
TTCGGACCGA CCGCTGCGTT CGCCGTCAAC GACCTGGTTC GCCGAGGCCG GCTGCGCCGC
CGGCCCACGG GCTGGTTCTG GACGCAACGG GCCCGGCCGG ATGTGGACAT CCGAGGGGCG
GGAGGACCAC CGGTTCGCAT CGTCGAAGCG CGGACCGGTC GGCTTCTGGG CACCGTGGAC
GCCGCGACCT CGCACACGAC GGTGCACGCT GGCGCGGTCT ATCTCCACCA GGGATCGAGC
TTCGTGGTCG AGGACCTCGA CCTCGAGGAA TCCGTCGCGT TCGTATGCGA GTCGGCGCCG
GAATGGACGA CCACCGCGCG TGACCACACC GACATCAGGG TGGTGGAGTC GTCGCGATCC
CGGGTGCTGC CCGACGTGGA GGTGCACCTC GGCGTGGTCG AGGTCACCAG CCAGGTCGTC
GGATACCAGC GGCGGCTGAT CGCGACGGGC GAGGTACTCG GGCAGGAGCC TCTCGATCTG
CCGCCGCGTC AGCTGCGGAC CCGGGCCGTC TGGTACACGC TGTCCGACGA CCTGCTTGCC
CGAGCCGCGA TCGAGCCTGC GGATGTCCCC GGTGCCGTCC ACGCCGCCGA ACACGCGGCG
ATCGGTCTGC TCCCGCTGTT CGCGACCTGT GACCGTTGGG ATATCGGCGG TGTCTCGACC
GCGCTCCATC CGGACACCGA ACGCACCAGC GTCTTCGTCT ACGACGGACA CGCCGGCGGG
GCGGGTTTCG CTGAACGGGG ATTCCTCCGA ATCGGTGCCT GGCTGGCTGC GACCCGGGAC
GCGATCGAAG CGTGTGAGTG CCCGGCGGGC TGCCCGTCGT GCGTCCAGTC GCCCAAATGC
GGAAATGGCA ATGAGCCGCT CGACAAGGCG GCTGCCTGGC GGCTCCTCGC CGCGGTGACC
GCCATGATCG GCTAG
|
|---|
| Protein sequence | MFGGFVRLRG AVTASRRISS IVVGSPVDVD GADTVLAGLR RDVRRARCMT HIERVPARDG
CPAPWPDWID PVLRGRWTAA GIASPWSHQA AAAEAAYAGR SVVLATGTAS GKSLGYLMPV
LSRLLAEPGA RALYLAPTKA LAHDQLRAVR SLRLTGIRAA AFDGDTPAAE RDWVRAHAGL
VLTNPDMLHR GILPFHRRWT QFLRGLRYVV VDECHGYRGV FGAHVAAVIR RLRRICARYG
TDPVFLLASA TVADPGVSAA RLTGVEVEVV DVDGSPRGPL DFVLYEPPLL TTGQSSPDRE
DPTSAPGPGE NGAPVRRSVT AESADLLTDL VADGVRTLVF VRSRRAAEVV AVTARRELGR
IAADLADRVA AYRAGYLPEE RRALEEDLRS GALLGAAATS ALELGVDISG LDATVTAGFP
GTLASLWQQA GRAGRDGRRS LAVLVARDDP LDTYLVHHPE AVFGRPVEAS VFDPDNPYVL
APHLECAAAE LALTEADLAL FGPTAAFAVN DLVRRGRLRR RPTGWFWTQR ARPDVDIRGA
GGPPVRIVEA RTGRLLGTVD AATSHTTVHA GAVYLHQGSS FVVEDLDLEE SVAFVCESAP
EWTTTARDHT DIRVVESSRS RVLPDVEVHL GVVEVTSQVV GYQRRLIATG EVLGQEPLDL
PPRQLRTRAV WYTLSDDLLA RAAIEPADVP GAVHAAEHAA IGLLPLFATC DRWDIGGVST
ALHPDTERTS VFVYDGHAGG AGFAERGFLR IGAWLAATRD AIEACECPAG CPSCVQSPKC
GNGNEPLDKA AAWRLLAAVT AMIG
|
|---|
| |