| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_4253 |
|---|
| Symbol | ispF |
|---|
| ID | 3907220 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 5075753 |
|---|
| End bp | 5076313 |
|---|
| Gene Length | 561 bp |
|---|
| Protein Length | 186 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 637881579 |
|---|
| Product | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
|---|
| Protein accession | YP_483328 |
|---|
| Protein GI | 86742928 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
|---|
| TIGRFAM ID | [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.988573 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGGCG GCCCGCGGTG GGACGAGCCC GTCGTGGACG CCGCGCCCAT CAGCCGGCAG
GCCCCCGCGT CCAGCTTGGT GAACACGGTG ATCCTGCCCC GGGTCGGCGT CGGGGTCGAT
GTGCATCCGT TCGCCGCCGG CCGGCCGTGC TGGGTGGCCT GCCTGGAATG GCCGGGGGAG
ACCGGGCTCG CCGGACACTC CGACGGGGAC GTCGCCGCAC ACGCGGCCTG TGACGCACTT
CTCACCGCCT CGTGCCTCGG TGATCTGGGT CGGGTGTTCG GCACGGACCG ACCGGAGTAC
GCGGGTGCGT CGGGCGCGGT CCTGCTGGCT GAGACGGCTC GGCTTCTCGG TGCCGCCGGT
TGGGCGATCG GCAACGTCTC GGTCCAGGTC ATCGGGAACC GGCCCAGGAT GGCCGGGCGT
CGCGAGGATG CGCAGAAGGC GATGTCCGTG GCCTTGGGCG CATCGGTGAG CCTGTCGGCC
ACCACCACCG ACGGACTCGG CCTCACCGGG CGGGGCGAAG GCTTGGCCGC CATCGCGACC
GCGCTCGTCA TCCGCGCCTG A
|
|---|
| Protein sequence | MTGGPRWDEP VVDAAPISRQ APASSLVNTV ILPRVGVGVD VHPFAAGRPC WVACLEWPGE
TGLAGHSDGD VAAHAACDAL LTASCLGDLG RVFGTDRPEY AGASGAVLLA ETARLLGAAG
WAIGNVSVQV IGNRPRMAGR REDAQKAMSV ALGASVSLSA TTTDGLGLTG RGEGLAAIAT
ALVIRA
|
|---|
| |