| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_4244 |
|---|
| Symbol | |
|---|
| ID | 3907210 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 5065287 |
|---|
| End bp | 5066936 |
|---|
| Gene Length | 1650 bp |
|---|
| Protein Length | 549 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637881570 |
|---|
| Product | formylmethionine deformylase |
|---|
| Protein accession | YP_483319 |
|---|
| Protein GI | 86742919 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
|---|
| TIGRFAM ID | [TIGR00079] peptide deformylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.928565 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTACG AATCTGGACC TTACCGGGTA TCGCCCAGGC TGCTGGCCCG GGAGGACTTC
CGGGCGGCGT GCGCGACGCG GGACTTCCGC ACGGTGTTCC GGCTGATGAA GAAGTACGAC
GGTGCCAGCC AGAATCGCAT CGCATCTCCG GTGGAAGGGC TCAGCCAGAG CAGGGTCAGC
CGGATCATGC AGGGCGAGGA CCACATCGCC CGGCTCTCCC TGATCGAACG CATCACCGAC
GCGCTGCGCA TCCCGGGCAG TTATTTCCAC CTGGCCGCAC GGCCGTGGGA GGCGGCACGG
GACGTGCGCG AGCCGCCCGG GCCGCCAACG GTTCCGGCCG GATCCGGCCC GACGCCGGTA
GCCCACGTCG CGACCCCCTC CGTCGACCCG GCCCCGGCCC CCGGCCCCGT CGTCGCCGAG
AGCCCGGGCC GGCTCCCCCC CGGACCGGGG GGCCTGGTCG TCGAGGAGGA CCGGGCCGAA
CTCCGCTACG ACGACAGCAT GTACGTCGCC CACCAGCGAA GACGTCTTCT CAACGCCGGC
AGCGAACCGG TAACCCGGTA TCTGATGCGG ATATCGGTCG ACCGGTTCCC GGGAGATCCG
GAACGCTCCG CGCGGTTGTA CCGATCCGAT CCGCTGCGCT GGGAGGACCT CCAGCTCAGC
GCGCACTGTG GCGGCGAGCA GATGGCCTGG CAGGTCAAGA CCGACTGGGA CGCGCTCAAG
GAGGTCTGGC TGCTCTTCGA GAACAGCCGA GGACGATTTC CGCTCTATCC CGGCGAATCG
GCGTGGATCA ACTACAGCTA CCAGGTAAGC AGGGAGAAGT GGGGGCCGTG GTTCCAGCGT
GCCGTGCGGG TACCGACGAG TTTCCTCTCG GTGCGGCTGG ACTTTCCGGC CGAGCTGGAT
CCCGTGGTCT GGGGCATGGA GACGTCGATG ACCGCCGATG CCTTCCCGTT GCGGACCGCA
GTCGCCCGCA CCGACTCCGG CGACCGGCGG ATCTTCACCT GGTCGACCAC CGAGCCGCCG
CTGCACGCCC GCTACCGGCT GGAATGGAAC TTCCGGGCCA CCGTGCCGGA ACGTGATCCG
GCCACGGAGA CCGGAACACG TCCCAGCGAT CAGATGGCGG CCGTCGGCAT CGTGCAGGAG
GGTGAGGCGA TCCTGCGGCA GCCGGCCCGC CCGTTCGCTC TGCCCAACGA GGCCGAAGAC
GCGCGCCGGG TCGTCGCCGA ACTGTCCTCC GCCCTCGAAC GGGTGTCCGC CCTGCACACC
TTCGGCAAGG GCCTGGGCAT CGCCGCGCCG CAGGTCGGCA TCAACCGCGC CGCGGCGATC
GTGCGTACCG CGGGCGGCGA CACGCTCACG CTGCTCAACC CCAGCGTCAT CGAGACCTCC
CGAGAGACCG ACGAGCAGTA CGAGGGCTGC CTGAGCTTCT TCGACGTCCG TGGCCTCGTC
CCCCGGCCGC TGGAGCTGCA CGTCGAACAC ACCGATATCG ATGGCAACCG GCACATCACC
GTCTATCGGC AGGGGCTGGC GCGGCTCGTC GCTCACGAGA TCGATCACCT GCACGGTCAG
CTCTACACGG ATCGGATGCG GGCCGGAACC ACACCGATCC CGGTGGAGCA GTACCGGGGT
ACCGGCTCGG CCTGGTCCTA CAACCGCTGA
|
|---|
| Protein sequence | MSYESGPYRV SPRLLAREDF RAACATRDFR TVFRLMKKYD GASQNRIASP VEGLSQSRVS
RIMQGEDHIA RLSLIERITD ALRIPGSYFH LAARPWEAAR DVREPPGPPT VPAGSGPTPV
AHVATPSVDP APAPGPVVAE SPGRLPPGPG GLVVEEDRAE LRYDDSMYVA HQRRRLLNAG
SEPVTRYLMR ISVDRFPGDP ERSARLYRSD PLRWEDLQLS AHCGGEQMAW QVKTDWDALK
EVWLLFENSR GRFPLYPGES AWINYSYQVS REKWGPWFQR AVRVPTSFLS VRLDFPAELD
PVVWGMETSM TADAFPLRTA VARTDSGDRR IFTWSTTEPP LHARYRLEWN FRATVPERDP
ATETGTRPSD QMAAVGIVQE GEAILRQPAR PFALPNEAED ARRVVAELSS ALERVSALHT
FGKGLGIAAP QVGINRAAAI VRTAGGDTLT LLNPSVIETS RETDEQYEGC LSFFDVRGLV
PRPLELHVEH TDIDGNRHIT VYRQGLARLV AHEIDHLHGQ LYTDRMRAGT TPIPVEQYRG
TGSAWSYNR
|
|---|
| |