| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_4235 |
|---|
| Symbol | |
|---|
| ID | 3907201 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 5053309 |
|---|
| End bp | 5054922 |
|---|
| Gene Length | 1614 bp |
|---|
| Protein Length | 537 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 637881561 |
|---|
| Product | peptidase S15 |
|---|
| Protein accession | YP_483310 |
|---|
| Protein GI | 86742910 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2936] Predicted acyl esterases |
|---|
| TIGRFAM ID | [TIGR00976] putative hydrolase, CocE/NonD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.59607 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACGCCA TCGACGCGAA CCAGGCCGTA CCGGCGGCGG ACGGCGTCCT GCTGGCGACC
GACGTCTACC GTCCCGACCG GCTACCCGCC CCGGCGGTGG TCACTCGCAC CCCGTACGGT
CGCGGTTCGC TGCTGGCAAA CGGCGTCGGG TGGGCGCGGA ACGGACTGGC CTACGTTGCC
CAGGACGTGC GGGGGCGCTA TGGGTCGGGC GGAACCTGGA CCCCGTATCA AGGGGAGCGC
GCCGATGGCC GGGCGTTGGT CGAATGGGTC CACCGCCAGC CCTGGTGCGA TGGGAACGTG
ATCCTCGCCG GAGCCTCCTA CGGCTCGTTC ACCGCGTGGG CAGCCGCCGT CACCGTTCCC
GAGCTCGTGC GCGCAGTGAT CAGCGAGGTA CCCGCCGCGG GTCTGCGGCC CGCCAACGTG
GACCCGTCGG GGATCCTGCG GCTGGCCGAG TACGCCGGCT GGTGGGCCGA GCACGCCGAG
AGCCGCACCA GCAGGAACGG GCTGTCCGCG CAGATGCTGG GCTGTGAGCC GGACCTGCTG
CGGCACCTGC CGGTAGCTGA CCTCGGCCGG CACCTCTGGG CACGGGTGCC ACGCTGGTGG
AGCGCCATAG CCCCGGCTCT GTCAGCCCCG GCTCTGTCAG CCCCGGCTCC GTTGACGACC
GGCGACAGCC CGGCACCGCA TGACCGTACT GGCGACGACC TCGGGGAGGG CATCAGCACG
CAGGAACTGG CCCGCTGCTC GCTGCCGTCC CTGCACATCG GCGGCTGGTA CGATCTCTTC
CTGCCACAGA CGCTGTGGCA GTGGGAAACC GCGGGCCGCG ACCGCGCTCC GAACAGGCCC
GCCCGGGGCC TGGTGATCGG GCCGTGGGGG CACGAGCTGT CGACCCCCGC TTCCAGCTCG
GCGGGTGGGC GGGAGCACGG GCCCGCCTCG CAACTGCCGC TGGGACGCCT CCAGGTCGCG
TGGATCTTTG ACGTGCTGGC CGGCCGGGAT GCGTCGATCA CCAAGGTGTT CCTCGTCGAG
GGCGGACGCT GGCTGGATCG GTGGCCGGCG TCCACCGCCA CCCTGGGCCT GCAGGCCAGC
GCTGACGGGT CACTCCTGCC GAACCCGCCC GAGCGGCCCG CCGAGCACCG GTTCACCTAC
GACCCGCTCG ACCCCTTCCC CAGCCTCCCG CGGGACTGCG ACCGTGCCCC CCTGGACGCC
CGCGCCGACG CCGTGGCATT CCGGACCCCG CCACTGACGA CGCCGACTGC CATCGTCGGC
GCACCCACCG TCACGATGGC CGCAGACACC ACGGGCCCCG GCACCGACTG GATAGTCCGG
CTGGTGGAGC GGCTCGGTGA CGGCCGGGCC TTGGAGGTCA CCAGCGGCGC CGCTGCCGTC
GGGCCCGGCG CGGCCACGGT GTCGATCCCG CTCGGCGCCA CGGCCCTGCT GCTCCACCCC
GGCAGCCGGC TGGAGCTGCA GGTCACCAGC AGCGACTTCC CGCGGCTGGC CCGCACCCCC
AACACCGGCC AGGACCGGTA CACCACCAGC GCCACCCGGA TCGCCACCCA GACCATCCAC
ACCGGTCCAA CCCGCGGCTG CCGGGTCGAC CTGCCCGTGC TGGAGCACCC GTGA
|
|---|
| Protein sequence | MHAIDANQAV PAADGVLLAT DVYRPDRLPA PAVVTRTPYG RGSLLANGVG WARNGLAYVA
QDVRGRYGSG GTWTPYQGER ADGRALVEWV HRQPWCDGNV ILAGASYGSF TAWAAAVTVP
ELVRAVISEV PAAGLRPANV DPSGILRLAE YAGWWAEHAE SRTSRNGLSA QMLGCEPDLL
RHLPVADLGR HLWARVPRWW SAIAPALSAP ALSAPAPLTT GDSPAPHDRT GDDLGEGIST
QELARCSLPS LHIGGWYDLF LPQTLWQWET AGRDRAPNRP ARGLVIGPWG HELSTPASSS
AGGREHGPAS QLPLGRLQVA WIFDVLAGRD ASITKVFLVE GGRWLDRWPA STATLGLQAS
ADGSLLPNPP ERPAEHRFTY DPLDPFPSLP RDCDRAPLDA RADAVAFRTP PLTTPTAIVG
APTVTMAADT TGPGTDWIVR LVERLGDGRA LEVTSGAAAV GPGAATVSIP LGATALLLHP
GSRLELQVTS SDFPRLARTP NTGQDRYTTS ATRIATQTIH TGPTRGCRVD LPVLEHP
|
|---|
| |