| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_4188 |
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| Symbol | |
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| ID | 3907153 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | + |
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| Start bp | 4999976 |
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| End bp | 5000635 |
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| Gene Length | 660 bp |
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| Protein Length | 219 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 637881516 |
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| Product | isopentenyl-diphosphate delta-isomerase |
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| Protein accession | YP_483265 |
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| Protein GI | 86742865 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1443] Isopentenyldiphosphate isomerase |
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| TIGRFAM ID | [TIGR02150] isopentenyl-diphosphate delta-isomerase, type 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGAGCCCGC AAGGATCCGA CTCCGACGTC GTGACGGTGC CGCGTGACGC GGCGTCACCA
CAGACGGTGT CGCGTGACAC CGCGTCGGTC CCGCCCGCCG ACGAGGTCGT GCTCCTCGAC
GCCGAACGCC GCCCCTGCGG GACGGCGCCG CGGATCGCCG TGCACGGCCT CGACACCCCC
CTGCACCTGG CGTTCTCGTC CTACCTTTTC GACCCGTCCG GCAGGCTGCT CGTCACCCGC
CGGGCGCTCG ACAAGCGGAC CTGGCCGGGG GTGTGGACGA ACAGCTGCTG TGGGCATCCC
CGCCCAGGCG AGGATCTGGC GCGGGCCGTC GAGCGCCGGG TAGGCCAGGA ACTCCGCCTG
GAGTTGACCG ACCTGCACTG CGCGCTGCCG GACTTCGCCT ACCGCGCCAC CGCCGCCGAC
GGTCTCGTGG AGAACGAGGT CTGCCCGGTC TACGTGGCGC GGGCGCTCGG GGACCCGGAT
CCGGACCCGG CCGAGGTGGT CGAGTGGCGC TGGGTCGAGT GGGACGACTA CCGCCGGGTG
GCCGCCGCCG CGCCCTGGGC GCTAAGCCCC TGGTCGGTCG ACCAGATGGC GGCGTTCAGC
GCGGCGGCCC ATCCGCTGAC CGCCGCGCTC TCCCTCGTCT CCGGCGGAAC CCACGCCTGA
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| Protein sequence | MSPQGSDSDV VTVPRDAASP QTVSRDTASV PPADEVVLLD AERRPCGTAP RIAVHGLDTP
LHLAFSSYLF DPSGRLLVTR RALDKRTWPG VWTNSCCGHP RPGEDLARAV ERRVGQELRL
ELTDLHCALP DFAYRATAAD GLVENEVCPV YVARALGDPD PDPAEVVEWR WVEWDDYRRV
AAAAPWALSP WSVDQMAAFS AAAHPLTAAL SLVSGGTHA
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