| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_4183 |
|---|
| Symbol | |
|---|
| ID | 3907148 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 4987638 |
|---|
| End bp | 4988354 |
|---|
| Gene Length | 717 bp |
|---|
| Protein Length | 238 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 637881511 |
|---|
| Product | sigma-24 |
|---|
| Protein accession | YP_483260 |
|---|
| Protein GI | 86742860 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.000601717 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.750213 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCGGCGC CGGCGGCCGG CCACCAAACC CGCGCCGGGG TCGGCAGGCC GTCCGTTGGG
GAGCCGTCCC CCAAGGAGCC GTCCGTCAAG GAACCGTCCG TCGAGGAGTC GGATCTTTCC
TCGGCGGTGA GCGGGGCACG CCGCGGTGAC GAGGCGGCCT TCAGGCTGCT CTACCGGACG
ATCCAGCCGG GTCTGTTGCG GTACCTGCGG GTACTCGTCG GTGACGAGGC CGAGGATGTC
GCGTCCGAGG CATGGCTGCA GATAGCCCGG GACCTGCCGT CGTTCCGTGG GGACTTCGAC
GGGTTTCGCG GCTGGGTAGC CACGATCGCG CGTCATCGCG CGCTCGACCA GCTGCGCCGG
CGATCTCGCC GCCCGCGCGG TGACGTACCG GTCGAGACGG TGATGACGGA GATGGCCGCG
CCCGATGACA CCGCCGGCGA GGCGTTGGAG GCGATGTCCA CCGAGGCCGC CATGCGCCTG
ATCGCGGGCC TGCCGTTGGA CCAGGCGGAG GCGGTGCTCC TGCGGGTGGT CATGGGGCTG
GACGCGAAGA CCGCGGGGCG GGTTCTGGGC AAGCGCGCCG GCGCGGTCCG CACCGCGGCG
CACCGGGGGC TACGCAGGCT TGCCGAACAG CTCGGTGATG GTGGGGGCAC CGGGGTTGGT
CGACCGGAGG CAGGTGAACC AGGTGAACAT GGTCGGGGTG GCGGCGCGCG GCGATGA
|
|---|
| Protein sequence | MPAPAAGHQT RAGVGRPSVG EPSPKEPSVK EPSVEESDLS SAVSGARRGD EAAFRLLYRT
IQPGLLRYLR VLVGDEAEDV ASEAWLQIAR DLPSFRGDFD GFRGWVATIA RHRALDQLRR
RSRRPRGDVP VETVMTEMAA PDDTAGEALE AMSTEAAMRL IAGLPLDQAE AVLLRVVMGL
DAKTAGRVLG KRAGAVRTAA HRGLRRLAEQ LGDGGGTGVG RPEAGEPGEH GRGGGARR
|
|---|
| |