Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Francci3_3989 |
Symbol | |
ID | 3906949 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. CcI3 |
Kingdom | Bacteria |
Replicon accession | NC_007777 |
Strand | - |
Start bp | 4772901 |
End bp | 4774742 |
Gene Length | 1842 bp |
Protein Length | 613 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637881317 |
Product | recombinase |
Protein accession | YP_483068 |
Protein GI | 86742668 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1961] Site-specific recombinases, DNA invertase Pin homologs |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCGCGCT CGACTGCGCG CCGTACTACC GCGAAACGCA CCAAGCAGGC CGTCGCCGCG CAACCCGAGA TCGTCCGGGT CGGGATCTAC CTGCGTCGCT CCACTGACGA CGAGAACCAG CCCTACACGA TCGAGGCCCA GGAAGAACGG CTGCGCTCCT ACGTCGACTC CCAACCCAAC TGGATCGTCG CCCTGCGGTT CGCCGACGAC GCCTCCGGCG CCACCACCGA ACGCAAGGAC CTCCAGCGGG CCCTGGCCGC CGCCCGCAAC GGGCTCATCG ACGTCCTGCT CGTCTACCGC GTCGATCGGC TCTCCCGCAG CCTGCGCGAC ACTGTCGATC TCCTCGAAGA ACTCGAACAG GCCGGGGTCG TGTTCCGCTC GGCCACGGAG CCGTTCGACA CCGCCACTCC CATCGGCCGC ATGCTTCTCC AGATACTGGC GATGTTCGCG CAGTTCGAGC GCGATATGAT CATCGACCGG GTCATCGCCG GGATGGAACG CAAGGCCGCC AAGGGTCTGT GGAAAGGCGG ACGGCGCCCG TTCGGCTACC AGGTCGACAA GATCGCCAAA AAGCTCATCA TCGATGTCGC CGAAGCCACG ATCGTCCGGC TGATCTTCGA CCTGTACGTC CGCGACCGCC TCGGAACCAG AGCCATCGCG AGCGTCCTGA ACAACCGCGG CCTGCGTACC ACCGTCGGCG GCCCCTGGTC CGGCCACAAG ATCCTGCGCA TGCTCGACAA CAGAGCCTAT CTGGGTGAAC TGACCTTCCG CGAGATCACC GTCGAAGGCA CCCACGAACC GATCATCGAC GAGGAGACGT TCGACGCCGC TCAGAAGATC CTCACCGAAC GCAGCGAGGA GACCTCACGC CGGGCCTCCA ACCCCTCCGA CTACTACCTC ACCGGCCGGA TGCGCTGCCC CCAGTGCGGC ACAGCCCTCA TCGGCACCCG CGCGACCGGC CGCAACCACA CCTACCGCTA CTACACCTGC CACACCCGCA ACCGCTACAA CCGCCACGAA TGCGACGCCC CCCGCCTCGA CGCCGACGCC GTCGACTACG CCGTACTCAC CGCTCTTGCC GGCTTCTACC GCGACCACCA GCAGCTCATC GCCGACGCCG TCCTCAAAGC CCAGCGCAGC CACCGCGACG CCCGATCCGA ACACACGGCC GAACTCAGCA CCATTGAGAC GGAACTCACC CTGACAGACC AGGCCATCGA CCGTTATCTT GGGGCGTTCG AGCGCGGTAC CCTCGACGAC GAGACCCTCG CCACACGCCT CGAAGCACTA CGCACCAAGC AGAAGCAGCT CCGCCAACGG CAGGCCGAAC TCACCGAAGA GATCGACCAC GAACCCGTTA TGCCGGCCCG TTCCAGCCTT CGCGCAGTCA CCCGGCACAT CGAAACGATT ATCGAGACAG GCGACGACCT CGGACGCAAG GCTCTCATCG AAGCCTTGGT CGCCGAAGTA AAGATCACCG GACCCGACCG GCTCACACCG ATCTTCAAGG TCCTCGGACC CGACGCTCCA AGGGACGTCA CCAACGTAGA CACTGGAGAC ATCAGCCAGC CGAAGCTGAC CCAACCAGCC ACGTCCCCCG CCCCCCACAG GGGCGCCGCA GCTGTCCTAC CAGCCACAAC GCCCCCGAAG GGAGCGGTTC GCGCAATGCC TACATTGGTG GAGGTGAGGG GACTCGAACC CCTGGCCTCC TCCGTGCGAG GGAGGCGCTC TACCAGGCTG AGCTACACCC CCTGGAAGCA TCTGAAGCTT ACAGGACCGC GTAGCCCATG TGACGACCAC CCGGTTCGGA TGGATCGCCA CCTCCGGCCG GCCGTCAGCT GA
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Protein sequence | MPRSTARRTT AKRTKQAVAA QPEIVRVGIY LRRSTDDENQ PYTIEAQEER LRSYVDSQPN WIVALRFADD ASGATTERKD LQRALAAARN GLIDVLLVYR VDRLSRSLRD TVDLLEELEQ AGVVFRSATE PFDTATPIGR MLLQILAMFA QFERDMIIDR VIAGMERKAA KGLWKGGRRP FGYQVDKIAK KLIIDVAEAT IVRLIFDLYV RDRLGTRAIA SVLNNRGLRT TVGGPWSGHK ILRMLDNRAY LGELTFREIT VEGTHEPIID EETFDAAQKI LTERSEETSR RASNPSDYYL TGRMRCPQCG TALIGTRATG RNHTYRYYTC HTRNRYNRHE CDAPRLDADA VDYAVLTALA GFYRDHQQLI ADAVLKAQRS HRDARSEHTA ELSTIETELT LTDQAIDRYL GAFERGTLDD ETLATRLEAL RTKQKQLRQR QAELTEEIDH EPVMPARSSL RAVTRHIETI IETGDDLGRK ALIEALVAEV KITGPDRLTP IFKVLGPDAP RDVTNVDTGD ISQPKLTQPA TSPAPHRGAA AVLPATTPPK GAVRAMPTLV EVRGLEPLAS SVRGRRSTRL SYTPWKHLKL TGPRSPCDDH PVRMDRHLRP AVS
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