Gene Francci3_3959 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFrancci3_3959 
Symbol 
ID3906918 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. CcI3 
KingdomBacteria 
Replicon accessionNC_007777 
Strand
Start bp4736639 
End bp4738477 
Gene Length1839 bp 
Protein Length612 aa 
Translation table11 
GC content73% 
IMG OID637881286 
ProductABC transporter related 
Protein accessionYP_483038 
Protein GI86742638 
COG category[R] General function prediction only 
COG ID[COG0488] ATPase components of ABC transporters with duplicated ATPase domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.143764 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGCGCCG TCCTGGTCAG CCTCGAGAAC GTCAACGCCG CGTTCGGCAC CCGGACGTTG 
CTCGACCGGG TGAGCCTGGG GATCGGCGCC GGGGAACGGA TCGGGGTCGT GGGGCGCAAC
GGGGCCGGGA AGTCCACCCT GCTGCGGATC ATCGCCGGCG AGGTGGCCCC GGACGCCGGC
CGGGTCGTGC CCGCCGGTTC CACCCGGGTC GCCACCCTGG CGCAGGCAGA CGTGCTCCCC
GCCGAGCGCA CCGTGCGCGA GATTGTCGTG GGCACCGTCG CTGAGCACGA GTGGGCGGCG
GATCCCCGGC AGCGGGGCAT CCTCGCCGGG CTCGGGCTGC TCGAACGGCT CGACGACCCG
GTCGGACCGA TGTCGGGCGG GGAACGCCGC CGGGTGGCGC TGGCCCGGCT CCTCGTCCAG
GACACCGACC TGCTGATCCT GGACGAGCCG ACGAACCACC TGGACGTCGA GGGGGTCGCC
TGGCTCGCCC GGCATCTAGC CGGCTTCCGC GGTGGACTGC TCGTCGCGAC CCACGACCGC
TGGTTCCTCG ACGAGGTGTG CGGACGGGTC TGGGAAGTCG TGGACGGGCG TGTCGACGCG
TACGAGGGCG GCTACTCAGC GTACGTGCTC GCGCGGGCCG AACGCACCCG GCGGGCCGAC
GCCACCGAAG CCAGGCGCCA GAACCTGCTG CGTAAGGAAC TCGCCTGGCT ACGCCGCGGC
CCGCCCGCCC GGACCAGTAA GCCGCGCTTC CGCATCGACG CCGCCAATGC GCTGATCGCC
GACGAGCCGC CGCCCCGGGA CACCATGGCG CTGCGCAGCT TCGCGGCATC CCGGCTGGGC
AAGGACGTCT ACGACGCCGA GCACATCACG GTCCGGATCG GGGACCGGAC GTTGTTCGAC
GACGTCACCT GGCTGGTCGG ACCGGGGGAC CGGATCGGGC TGGTCGGTGT CAACGGAGCC
GGCAAGACCA CCCTGCTACG CGTGCTGCTG GGTGCGGTGA CGCCGGAGGC CGGCCGGGTC
CGGGTGGGGG CCAGCGTGCG ACCGGCCCTG CTGTCCCAGG AGATTGCCGA ACTACCGGCG
TCGCTGCGGG CGCTGGAGGC CGTCGAACAG GTCGGGCAGG TCCTGGAGGT CGAGAAGGGC
CGGGAACGGA CCGCCGGCCA GTTACTCGAG CAGTTCGGCC TCCCGTCGTC ACGGCAGTGG
ACGCGGGTCG GGGACCTCTC CGGCGGCGAA CGCCGCCGGC TGCAGCTGCT GCGCCTGCTG
ATGGCCAGAC CGAACGTGCT GCTCCTCGAC GAGCCGACCA ACGACCTCGA CACCGACACC
CTCACCGCGC TCGAGGACCT CCTCGACTCG TGGCCGGGCA GCCTGATCGT GGTCAGCCAC
GACCGCTATT TCCTCGAACG CACCTGCGAC GTGACACTGG CGCTACTTGG CGACGGGCAC
CTGCGCATGC TGCCCGGCGG CATCGAGGAG TACCTCGCCC GGCGCGCGGC CGCCCGGCAG
GACGCCGCGG CTCGGGCACC GTCATCCCGG GGTTCGTCGG CCGCCGGCTG CGGAGCGGGC
GGACAGACCA CCACCGTCGC CGAAGCCGGG CGGACAGGTG GGCCGCCCGT CCTGTCCGGG
GGCGAGCTGC GCGCCGCCCG CAAGGAGCTG ACCCGGCTCG AGCGCGCCCT GGATCGCCTG
AGCCGACGCG AGCAGGAGCT GCATCACGAG CTGGCCGAGG CCGCGACGGA TCACGAGCGT
CTGCTGACGC TGGACGCCGA GCTGCGCGCC GTCGTCGCGG ACAAGGACAG CACCGAGGAG
GCCTGGCTCA CCCTCGCCGC CGAGATCGAG GGTGGCTGA
 
Protein sequence
MSAVLVSLEN VNAAFGTRTL LDRVSLGIGA GERIGVVGRN GAGKSTLLRI IAGEVAPDAG 
RVVPAGSTRV ATLAQADVLP AERTVREIVV GTVAEHEWAA DPRQRGILAG LGLLERLDDP
VGPMSGGERR RVALARLLVQ DTDLLILDEP TNHLDVEGVA WLARHLAGFR GGLLVATHDR
WFLDEVCGRV WEVVDGRVDA YEGGYSAYVL ARAERTRRAD ATEARRQNLL RKELAWLRRG
PPARTSKPRF RIDAANALIA DEPPPRDTMA LRSFAASRLG KDVYDAEHIT VRIGDRTLFD
DVTWLVGPGD RIGLVGVNGA GKTTLLRVLL GAVTPEAGRV RVGASVRPAL LSQEIAELPA
SLRALEAVEQ VGQVLEVEKG RERTAGQLLE QFGLPSSRQW TRVGDLSGGE RRRLQLLRLL
MARPNVLLLD EPTNDLDTDT LTALEDLLDS WPGSLIVVSH DRYFLERTCD VTLALLGDGH
LRMLPGGIEE YLARRAAARQ DAAARAPSSR GSSAAGCGAG GQTTTVAEAG RTGGPPVLSG
GELRAARKEL TRLERALDRL SRREQELHHE LAEAATDHER LLTLDAELRA VVADKDSTEE
AWLTLAAEIE GG