Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Francci3_3959 |
Symbol | |
ID | 3906918 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. CcI3 |
Kingdom | Bacteria |
Replicon accession | NC_007777 |
Strand | + |
Start bp | 4736639 |
End bp | 4738477 |
Gene Length | 1839 bp |
Protein Length | 612 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 637881286 |
Product | ABC transporter related |
Protein accession | YP_483038 |
Protein GI | 86742638 |
COG category | [R] General function prediction only |
COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.143764 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAGCGCCG TCCTGGTCAG CCTCGAGAAC GTCAACGCCG CGTTCGGCAC CCGGACGTTG CTCGACCGGG TGAGCCTGGG GATCGGCGCC GGGGAACGGA TCGGGGTCGT GGGGCGCAAC GGGGCCGGGA AGTCCACCCT GCTGCGGATC ATCGCCGGCG AGGTGGCCCC GGACGCCGGC CGGGTCGTGC CCGCCGGTTC CACCCGGGTC GCCACCCTGG CGCAGGCAGA CGTGCTCCCC GCCGAGCGCA CCGTGCGCGA GATTGTCGTG GGCACCGTCG CTGAGCACGA GTGGGCGGCG GATCCCCGGC AGCGGGGCAT CCTCGCCGGG CTCGGGCTGC TCGAACGGCT CGACGACCCG GTCGGACCGA TGTCGGGCGG GGAACGCCGC CGGGTGGCGC TGGCCCGGCT CCTCGTCCAG GACACCGACC TGCTGATCCT GGACGAGCCG ACGAACCACC TGGACGTCGA GGGGGTCGCC TGGCTCGCCC GGCATCTAGC CGGCTTCCGC GGTGGACTGC TCGTCGCGAC CCACGACCGC TGGTTCCTCG ACGAGGTGTG CGGACGGGTC TGGGAAGTCG TGGACGGGCG TGTCGACGCG TACGAGGGCG GCTACTCAGC GTACGTGCTC GCGCGGGCCG AACGCACCCG GCGGGCCGAC GCCACCGAAG CCAGGCGCCA GAACCTGCTG CGTAAGGAAC TCGCCTGGCT ACGCCGCGGC CCGCCCGCCC GGACCAGTAA GCCGCGCTTC CGCATCGACG CCGCCAATGC GCTGATCGCC GACGAGCCGC CGCCCCGGGA CACCATGGCG CTGCGCAGCT TCGCGGCATC CCGGCTGGGC AAGGACGTCT ACGACGCCGA GCACATCACG GTCCGGATCG GGGACCGGAC GTTGTTCGAC GACGTCACCT GGCTGGTCGG ACCGGGGGAC CGGATCGGGC TGGTCGGTGT CAACGGAGCC GGCAAGACCA CCCTGCTACG CGTGCTGCTG GGTGCGGTGA CGCCGGAGGC CGGCCGGGTC CGGGTGGGGG CCAGCGTGCG ACCGGCCCTG CTGTCCCAGG AGATTGCCGA ACTACCGGCG TCGCTGCGGG CGCTGGAGGC CGTCGAACAG GTCGGGCAGG TCCTGGAGGT CGAGAAGGGC CGGGAACGGA CCGCCGGCCA GTTACTCGAG CAGTTCGGCC TCCCGTCGTC ACGGCAGTGG ACGCGGGTCG GGGACCTCTC CGGCGGCGAA CGCCGCCGGC TGCAGCTGCT GCGCCTGCTG ATGGCCAGAC CGAACGTGCT GCTCCTCGAC GAGCCGACCA ACGACCTCGA CACCGACACC CTCACCGCGC TCGAGGACCT CCTCGACTCG TGGCCGGGCA GCCTGATCGT GGTCAGCCAC GACCGCTATT TCCTCGAACG CACCTGCGAC GTGACACTGG CGCTACTTGG CGACGGGCAC CTGCGCATGC TGCCCGGCGG CATCGAGGAG TACCTCGCCC GGCGCGCGGC CGCCCGGCAG GACGCCGCGG CTCGGGCACC GTCATCCCGG GGTTCGTCGG CCGCCGGCTG CGGAGCGGGC GGACAGACCA CCACCGTCGC CGAAGCCGGG CGGACAGGTG GGCCGCCCGT CCTGTCCGGG GGCGAGCTGC GCGCCGCCCG CAAGGAGCTG ACCCGGCTCG AGCGCGCCCT GGATCGCCTG AGCCGACGCG AGCAGGAGCT GCATCACGAG CTGGCCGAGG CCGCGACGGA TCACGAGCGT CTGCTGACGC TGGACGCCGA GCTGCGCGCC GTCGTCGCGG ACAAGGACAG CACCGAGGAG GCCTGGCTCA CCCTCGCCGC CGAGATCGAG GGTGGCTGA
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Protein sequence | MSAVLVSLEN VNAAFGTRTL LDRVSLGIGA GERIGVVGRN GAGKSTLLRI IAGEVAPDAG RVVPAGSTRV ATLAQADVLP AERTVREIVV GTVAEHEWAA DPRQRGILAG LGLLERLDDP VGPMSGGERR RVALARLLVQ DTDLLILDEP TNHLDVEGVA WLARHLAGFR GGLLVATHDR WFLDEVCGRV WEVVDGRVDA YEGGYSAYVL ARAERTRRAD ATEARRQNLL RKELAWLRRG PPARTSKPRF RIDAANALIA DEPPPRDTMA LRSFAASRLG KDVYDAEHIT VRIGDRTLFD DVTWLVGPGD RIGLVGVNGA GKTTLLRVLL GAVTPEAGRV RVGASVRPAL LSQEIAELPA SLRALEAVEQ VGQVLEVEKG RERTAGQLLE QFGLPSSRQW TRVGDLSGGE RRRLQLLRLL MARPNVLLLD EPTNDLDTDT LTALEDLLDS WPGSLIVVSH DRYFLERTCD VTLALLGDGH LRMLPGGIEE YLARRAAARQ DAAARAPSSR GSSAAGCGAG GQTTTVAEAG RTGGPPVLSG GELRAARKEL TRLERALDRL SRREQELHHE LAEAATDHER LLTLDAELRA VVADKDSTEE AWLTLAAEIE GG
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