| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3944 |
|---|
| Symbol | |
|---|
| ID | 3906903 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 4720256 |
|---|
| End bp | 4722319 |
|---|
| Gene Length | 2064 bp |
|---|
| Protein Length | 687 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 637881271 |
|---|
| Product | FkbH domain-containing protein |
|---|
| Protein accession | YP_483023 |
|---|
| Protein GI | 86742623 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3882] Predicted enzyme involved in methoxymalonyl-ACP biosynthesis |
|---|
| TIGRFAM ID | [TIGR01681] HAD-superfamily phosphatase, subfamily IIIC
[TIGR01686] FkbH-like domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.544993 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACA GAAGGGACGT CGGCACGGAC GTCGGCGAGG GCGTCGCGTC ACCGCCGGAA
CATCCGCGGA TCGCCGAGTT GACCGCGCGT GCCGCCACGA GTGAGATCCC GACCGCGGCG
CTGTGCCGTG ATCTCGCCGT CGCGCACGAG CGGGCCGGCG ACGACGCCGG GGCCGTGCGG
TGGGCCCTGG CGCTCACCGA CGCCGGCAGC GACCTCGGTG CCTGGTCGGC CGCTGCCGGC
GTGCTGCGCC GCGTCCTGCC GCGGGTCGCG CCGCTGCCGA GGTCCGCGCG GGTGGCCGTG
CTCGGCAGTT ACACGACGTC GCAGTTCGCC GCGCTGTTGC CGCTGGCCGC GGCGCGAGCC
GGGGTCGCCG TCGAGGTCTA CGAATGCGGC TATGGGCAGT ACCGCCAGGA GGTCCTGGAC
CCCGCGAGTG AGCTCTACCG GTTCCGGCCC GACGTCGTCG TGCTCGCGGT GCACGCCGGG
GAGACCGCCC TGCCGGCGGT CGCCGACGAC CCGGCCGCCT CGGTGGCCAC CGAGGTCGAG
CGTTGGACGT CGCTGTGGGA CATGATCATA AATCGGTGCG GGGCCCGGAT CGTCCAGCAC
ACCTTCGCCA TCCCCGGCGA GGTCGCGCTC GGCCATCTGG CGTTGCGGGT TCCCGGCTCC
CGGCCGGCGA TGCTCGCGCG GGTCAACGCC GAACTCGGCC GGGTGTCCGG CGAGCGGGGC
GACGGGGTCG CCTTCGTCGA CTGCGAGCGG CTCGCCGCCG ACGTGGGCAA GCGTGCCTGG
TTCGACGCGC GGTACTGGCA CCGGTCCAAG CAGGCGGTGT CGCTCGCGCA GGTGCCGCTG
CTGGCCCGGC ACACCGCCGC GGTGATCGGG GCTCAGCTGG GAACGAGCCG GAAGTGCCTG
GTCCTCGACC TCGACAACAC TCTGTGGGGC GGCGTGCTCG GGGAGGAGGG CCTGGCCGGC
ATCGCGCTCG GCGATGGCGC TGTCGGGGAG GCGTTCGCCG CGTTCCAGAC GTACGTCGCC
GAGTTGAAGG CCCGCGGGGT CGTGCTCGCC GTCTGTTCCA AGAACAACGA CGCCGACGCC
CGGGAGGCGT TCGAGCGTCA TCCGGGGATG CGGCTCGGCC TCGATGACAT CGCGGTGTTC
AGCGCCTGCT GGGACGACAA GCCGACGCAG ATCCGCCGGA TCGCCGCCGC GCTCGGCCTC
GGCCTCGACG CGCTGGTCTT CGTTGACGAC AACCCGGCCG AACGCGAGGT CGTCCGCCAA
CTCGTTCCCG AGGTGGACGT CGTGGCGCTG CCCGCCGATC CGCACGGCTA CGTCCGGGCG
CTGGCGGACT ATCCCTTCTT CGAGGCCAGC GCCCTCACGG CCGAGGACGC CGCGCGCACC
GCCGCGTACC GGGCCCGGGC CGAGACGGCT GCCGCCGCCG CGGCGGCGAC CTCGCTGGAG
GATTTCCACC GCGGGCTGGA CATGACCGCT ACCGTGGTCC CGCTCGACGA CATGACCCTG
CCGCGGGTCG CCCAGTTGGT CGGCAAGACC AACCAGTTCA ACCTGACCGG TCGCCGCCGG
GGCGCCGCCG AGATCGAGCG GCTGGCCGCC GATCCCGGCA CGGCGGTGTT CTGCGTCCGG
CTCGCCGACC GGTTCGCCGA CCACGGGCTG GTCGCCGTGG TCATCGCGGT GGAGTCGGCG
GACGCGCTGG ACATCGACAC CTGGCTGATG AGCTGCCGGG TGATCGGCCG GACCCTCGAG
GACGAGGTGG CCGCGCTTGT TCTCGCCGAG GCCCGCCGCC GCGGCCTCGC CCGCGTGACC
GGGCACTACC GGCCGTCGGC GAAGAACGTT CTGGTGGCCG GCCTCTACGA ACGGCTCGGT
TTCGAGCGGG TCGACCCGGC GCCGGCCACG ACCCCGGCGG CGGAGACGAC GTGCTGGAGC
CGTGATGCGC GGTCGCCGTA CCTGCCGCCT GGGCTCATCC GGGTCGTCGT GGCCGAGCCG
TCCGGCGTCG TGGCCGGGCT GTCTCCCCAG GTGTTCCCCC AGCCGCGGCC ACAGGACCGC
AAGATGGAAG AGGTGCCTCG CTGA
|
|---|
| Protein sequence | MTDRRDVGTD VGEGVASPPE HPRIAELTAR AATSEIPTAA LCRDLAVAHE RAGDDAGAVR
WALALTDAGS DLGAWSAAAG VLRRVLPRVA PLPRSARVAV LGSYTTSQFA ALLPLAAARA
GVAVEVYECG YGQYRQEVLD PASELYRFRP DVVVLAVHAG ETALPAVADD PAASVATEVE
RWTSLWDMII NRCGARIVQH TFAIPGEVAL GHLALRVPGS RPAMLARVNA ELGRVSGERG
DGVAFVDCER LAADVGKRAW FDARYWHRSK QAVSLAQVPL LARHTAAVIG AQLGTSRKCL
VLDLDNTLWG GVLGEEGLAG IALGDGAVGE AFAAFQTYVA ELKARGVVLA VCSKNNDADA
REAFERHPGM RLGLDDIAVF SACWDDKPTQ IRRIAAALGL GLDALVFVDD NPAEREVVRQ
LVPEVDVVAL PADPHGYVRA LADYPFFEAS ALTAEDAART AAYRARAETA AAAAAATSLE
DFHRGLDMTA TVVPLDDMTL PRVAQLVGKT NQFNLTGRRR GAAEIERLAA DPGTAVFCVR
LADRFADHGL VAVVIAVESA DALDIDTWLM SCRVIGRTLE DEVAALVLAE ARRRGLARVT
GHYRPSAKNV LVAGLYERLG FERVDPAPAT TPAAETTCWS RDARSPYLPP GLIRVVVAEP
SGVVAGLSPQ VFPQPRPQDR KMEEVPR
|
|---|
| |