| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3932 |
|---|
| Symbol | |
|---|
| ID | 3906891 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 4706333 |
|---|
| End bp | 4707115 |
|---|
| Gene Length | 783 bp |
|---|
| Protein Length | 260 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 637881259 |
|---|
| Product | 4-diphosphocytidyl-2C-methyl-D-erythritol synthase |
|---|
| Protein accession | YP_483011 |
|---|
| Protein GI | 86742611 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
|---|
| TIGRFAM ID | [TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.135796 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCGACA CCGCTGTCGC CGTCGCCAAC GGTGCGGGGA GCACCGGGAA CAGCGGCCCG
GTCTGGACGA TCGTGCTGGC CGGCGGCGGC GGCACGCGTT TCGGCGGGCC GAAACAGTTC
TTCGACCTCG GGGGTGAGCC CCTGCTCGCC CATCCGGTCG CGGCGGCGCG GCCCGCCAGT
GACGGCATCG TCGTGGTCGT CCCCGCCGCC CTGATCGGCC ACTGGTCACC GCCGGACGGA
GTGCGGATGG TCGCTGGCGG CGCCACCCGG GCCGAGTCCG TCCGGGCGGG GCTGGCTGCC
GTGCCCGCGG ACGCCGGGGT CATCGTGGTC ACCGACGCCG CCCATCCACT CGCGACTCCC
GCCCTGTACC AGCGGGTCAT CGACGAGGTC CGCGCCGGCG CCGACGCGGC CGTACCCGGG
CTCCCGCTCA CCGAGGTCGT CAAGGAGATC CGCTCGACGG TGCTCGGCAG CCCCCCCGAC
GACACCCCCC GGTTGGTCAC CGGGGCCTCG CTGCCGCGGG AGACTCACCG GCTCGTGCAG
ACCCCGCACG CCTTCCGGGC GGACCTGCTG CGCTCCGTGC ACGCGGAGGC CCGCGAGGCC
GTCGAGGACT CGGCGATGGT TGCCGCGGCC GGCGGCCTGG TCGTGGTCGT CCCCGGCGAG
CCGGCGAACA TCCATGTCAC CACGCCGGAC GAACTCGCCA TGGCCCGGCT GCTTCTCACC
CATGTTCGTT CCGAGGGGGA ACCTAATGAG TTCGGTACTG GTCGAATCCA CGCTGTCCGA
TGA
|
|---|
| Protein sequence | MTDTAVAVAN GAGSTGNSGP VWTIVLAGGG GTRFGGPKQF FDLGGEPLLA HPVAAARPAS
DGIVVVVPAA LIGHWSPPDG VRMVAGGATR AESVRAGLAA VPADAGVIVV TDAAHPLATP
ALYQRVIDEV RAGADAAVPG LPLTEVVKEI RSTVLGSPPD DTPRLVTGAS LPRETHRLVQ
TPHAFRADLL RSVHAEAREA VEDSAMVAAA GGLVVVVPGE PANIHVTTPD ELAMARLLLT
HVRSEGEPNE FGTGRIHAVR
|
|---|
| |