| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3930 |
|---|
| Symbol | |
|---|
| ID | 3906889 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 4704013 |
|---|
| End bp | 4704867 |
|---|
| Gene Length | 855 bp |
|---|
| Protein Length | 284 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637881257 |
|---|
| Product | nucleotidyl transferase |
|---|
| Protein accession | YP_483009 |
|---|
| Protein GI | 86742609 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1208] Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) |
|---|
| TIGRFAM ID | [TIGR02623] glucose-1-phosphate cytidylyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.24112 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACGG GAGACGCAAC AGCCTTGAGC ATCGAGATCG CCCAGACCAG CGAGATTCCC
GACGTGGCGG ACATCCCCGT CGTGATCCTG TGCGGCGGGA TGGGAACCCG GCTGCGGGAA
GCCAGCGAGA AACTACCCAA GCCGCTGGTG GACATCGGCG GCAAGCCGGT GCTGTGGCAC
ATCATGAAGA CCTACGAGCA CTATGGCTTC CGTAAGTTCG TGCTCTGCCT CGGCTACAAG
AGCGATCTGA TCAAGAACTA CTTCCTCGCC TACCGTGCGC AGGTCGCCGA CTTCACCCTC
ACGCTCTCCG ACGACCACAC CCCCCAGTTC CACAACACCG TGGGCGACGA GGCGTGGGAG
GTGACCTTCG CCGAGACGGG CCTACTCACC GGAACCGGAG CCCGGCTGCG CCGGGTCGCC
CAGTACCTGA CCGGCCCGCG GTTCATGCTG ACCTACGGCG ACGGCGTGGG TGCCGTCGAT
GTCGGCGCGG TGCTCGCCGA CCACCTGGCG TCGGGGCGGA TCGGGACGGT CACCGGCGTC
CGGCCGTCGA GTCGCTACGG CGAGCTGACC ACGGACGGCA ACGCCGTCAC CCTCTTCGCC
GAGAAGCCGC CGCAGACCGG CTGGGTGAGC GGGGGATACT TCGTCTTCGA GCGCGAGTTC
ATCGACAAGT ACCTCGACGA CGACCCGGCG CTGCTGCTGG AGCGTCACCC GCTGCAGCAG
CTGGCCCGGG ACAGCGAGCT GACCCTGCAC ACTCACGACG GGTTCTGGAT GGGTATGGAC
ACGTTCCGCG ACTGGACCGA GCTGAACCAG CTCTGGGATT CCGGTGCCGC GCCCTGGCGT
GTCTGGGCCG GCTGA
|
|---|
| Protein sequence | MSTGDATALS IEIAQTSEIP DVADIPVVIL CGGMGTRLRE ASEKLPKPLV DIGGKPVLWH
IMKTYEHYGF RKFVLCLGYK SDLIKNYFLA YRAQVADFTL TLSDDHTPQF HNTVGDEAWE
VTFAETGLLT GTGARLRRVA QYLTGPRFML TYGDGVGAVD VGAVLADHLA SGRIGTVTGV
RPSSRYGELT TDGNAVTLFA EKPPQTGWVS GGYFVFEREF IDKYLDDDPA LLLERHPLQQ
LARDSELTLH THDGFWMGMD TFRDWTELNQ LWDSGAAPWR VWAG
|
|---|
| |