| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3856 |
|---|
| Symbol | dapD |
|---|
| ID | 3905604 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 4620193 |
|---|
| End bp | 4621035 |
|---|
| Gene Length | 843 bp |
|---|
| Protein Length | 280 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 637881182 |
|---|
| Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
|---|
| Protein accession | YP_482935 |
|---|
| Protein GI | 86742535 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
|---|
| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.745348 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.136409 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCGCCT CGAACACATC CCTCGACTCT CCGATCGATC CCGCCGTCGA CGAACTGTGG
GAACGGCGGG CGGAGCTGAC CCCCGCCGAC GCCGACGCCC GCAAGATCGT GGTGGCCGCC
GTCGACGCCA TCGATGCGGG AGTGGCCCGG GTCGCCACGG TCACCGTGGA CGGCTCGGTC
GCCGTTGACG AGCGGGCCAA GCGGGCGATC CTGCTGTCCT TCAAGGTTCT CGCCATGGTC
GAGTCGTCCG CGGGCGACTT CCACTTCCAT GACCGGGTGC CGCTCAAGAC CCGGTTCGAC
AGCGTGCGGG TGGTACCGGG CGCGATCGTG CGCTGGGGCG CGCACGTCGA GCCCGGGGCC
GTCCTCATGC CGAGCTACAC CAACATCGGC GGCTACGTCG GCGCCGGCAC CCTCGTCGAC
ACCTGGGCCA CGGTCGGATC CTGCGCCCAG GTCGGCCGCA ACGTGCACCT GTCCGGTGGG
GTCGGGCTCG GCGGGGTCCT GGAGCCGCCG AACGCGGTCC CCGTCGTCGT CGAGGACGAC
GCCTTCGTCG GCAGTCGCTG CATGGTGGTG GACGGCGCGC GGGTGCGCCG CGGGGCCAAG
CTCGGCGCCG GGGCGATCCT GACCGCCTCC ACCCATGTCT TCGACGCCAC GACCGGCGCG
GAGTACCCGC GCGGGGAGAT CCCGGAGCGG GCGGTCGCGG TCGGTTCCAA CCGGGTGAAG
TCGTTCCCGG GCGGAGAGTT CGCGATGCCC TGCATCCTGG TGCTGCGGAC GCTCGCCGAG
GGCGAGATCC ACGACAAGCT GGCGTTGAAC GACATCCTGC GGGAGCATGG CGTCGCCGGC
TAA
|
|---|
| Protein sequence | MSASNTSLDS PIDPAVDELW ERRAELTPAD ADARKIVVAA VDAIDAGVAR VATVTVDGSV
AVDERAKRAI LLSFKVLAMV ESSAGDFHFH DRVPLKTRFD SVRVVPGAIV RWGAHVEPGA
VLMPSYTNIG GYVGAGTLVD TWATVGSCAQ VGRNVHLSGG VGLGGVLEPP NAVPVVVEDD
AFVGSRCMVV DGARVRRGAK LGAGAILTAS THVFDATTGA EYPRGEIPER AVAVGSNRVK
SFPGGEFAMP CILVLRTLAE GEIHDKLALN DILREHGVAG
|
|---|
| |