| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3821 |
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| Symbol | |
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| ID | 3905569 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | + |
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| Start bp | 4580534 |
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| End bp | 4582363 |
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| Gene Length | 1830 bp |
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| Protein Length | 609 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637881147 |
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| Product | cytochrome-c oxidase |
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| Protein accession | YP_482900 |
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| Protein GI | 86742500 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 |
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| TIGRFAM ID | [TIGR02891] cytochrome c oxidase, subunit I |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00155592 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0385819 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACGATTC TACACCAACC GAGAGAACCG GGCGGAGCGG CGGATACCGG GACGCAGCCA
GCGGATATCG TCGCCGCGCA CACCAGGCCA CGTACCCCTT TGCTCGGCTA TCTGCGGACG
ACGTCCCACA AGGACATCGC CATCCTGTAC GCCGTCACGT CGTTCGGGTT CTTCCTCTTC
GCCGGTGTCC TGGCCATCAT GATGCGGGCG GAACTCGCCC GCCCGGGGCT GCAGTACTTC
TCCAACGAGC AGTACAACCA GTTTTTCACG ATGCACGGCA CGCTGATGCT GCTCATGTTC
GCGACCCCGC TGGCGTTCGC GTTCGCGAAC TTCCTCGTGC CGCTGCAGAT CGGCGCGCCG
GACGTGGCGT TCCCGCGGCT GAACGCGCTG TCCTACTGGT TCTTCCTGTT CGGCAGCCTG
ACGGTGATCT TTGGGTTCCT GACCCCGAAC GGCGCCGCGT CCTTCGGCTG GTTCGCCTAC
TCGCCGCTGA ACAGCAAGGT GTACTCGCCG GGGGCCGGGT CGGACCTGTG GATCGTGGGT
CTCGCGGTCT CCGGTGTCGG TACCATCCTC GGCGCCGTCA ACATGATCAC GACGATCCTG
ACGATGCGGG CCCCGGGCAT GACGATGTTC CGGCTGCCGA TCTTCTGCTG GACCTTCCTG
GCGACCTCGA TCCTCGTGCT GATCGCCTTC CCCGTGCTCG CCGCGGCGCT GCTCGCCCTG
GAGGCCGACC GGCGCTTCGG CGCGCACGTG TTCGACGCCG CCAACGGCGG CGCGCTGCTC
TGGCAGCACC TGTTCTGGTA CTTCGGCCAC CCCGAGGTCT ACATCATCGC CCTGCCGTTC
TTCGGCGTCA TCAGCGAGAT CCTGCCGGTC TTCTCCCGCA AGCCGCTGTT CGGCTACAAG
GGTCTGGTCT TCGCCACCAT CGGCATCGCA GCCCTGTCCG TCGTGGTGTG GGCGCACCAC
ATGTTCGTCA CCGGCGCGGT GCTACTGCCC TTCTTCGCGC TGATGTCGTT CCTCATCGCG
GTACCGACCG GGATCAAGTT CTTCAACTGG ATCGGCACGA TGTGGCGCGG GCAGCTCACC
TTCGAGACGC CGATGCTGTT CGCGATCGGT TTCCTGGTGA CCTTCCTGTT CGGTGGTCTG
ACCGGGGTAC TGCTGGCCAG CCCGCCGATC GACTTCCACG TCAGCGACAG CTACTTCGTC
GTCGCCCACT TCCACTACGT CGTCTTCGGG ACCGTGGTGT TCGCCGCCTA CGGCGGCACC
TACTTCTGGT TCCCGAAGGT CACGGGCCGG CTGATGAACG ACCGGCTCGG GAAGATCCAC
TTCTGGACGG TCTTCCTCGG CTTCCACACG ACGTTTCTGG TGCAGCACTG GCTCGGCGTG
CAGGGTATGC CCCGCCGGTA CGCCGACTAC GGACCGAACG ACGGGTTCAC CACGCTGAAC
ACGATCTCGT CCGCGGGTTC GTTCCTGCTC GCCCTCTCGA CGCTGCCGTT CATCTACAAC
CTCTGGCACT CCTACCGCAA GGGCCCACTC GCCGTCGTCG ACGACCCCTG GGGCTACGGG
AACTCGCTGG AATGGGCGAC CTCCTGCCCC CCGCCGCGGC ACAACTTCCG GACGCTGCCG
CGCATCCGCT CCGAACGCCC GGCGTTCGAC CTGCACTATC CCCAGGCAGC CGGCCGCATC
GACTATCATG CGACCCCCGA GATCACACTG ACACCCGAGA CCACGCCGAG GCCCGAGACC
GCGGACCCGG CCGAATCCAC AGCGGCCGAA TCCACAGCGG CCGGACCCGA CCGCCCGGCG
CCGGAATCCG GCTTCAGGAC GCCGGAATAA
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| Protein sequence | MTILHQPREP GGAADTGTQP ADIVAAHTRP RTPLLGYLRT TSHKDIAILY AVTSFGFFLF
AGVLAIMMRA ELARPGLQYF SNEQYNQFFT MHGTLMLLMF ATPLAFAFAN FLVPLQIGAP
DVAFPRLNAL SYWFFLFGSL TVIFGFLTPN GAASFGWFAY SPLNSKVYSP GAGSDLWIVG
LAVSGVGTIL GAVNMITTIL TMRAPGMTMF RLPIFCWTFL ATSILVLIAF PVLAAALLAL
EADRRFGAHV FDAANGGALL WQHLFWYFGH PEVYIIALPF FGVISEILPV FSRKPLFGYK
GLVFATIGIA ALSVVVWAHH MFVTGAVLLP FFALMSFLIA VPTGIKFFNW IGTMWRGQLT
FETPMLFAIG FLVTFLFGGL TGVLLASPPI DFHVSDSYFV VAHFHYVVFG TVVFAAYGGT
YFWFPKVTGR LMNDRLGKIH FWTVFLGFHT TFLVQHWLGV QGMPRRYADY GPNDGFTTLN
TISSAGSFLL ALSTLPFIYN LWHSYRKGPL AVVDDPWGYG NSLEWATSCP PPRHNFRTLP
RIRSERPAFD LHYPQAAGRI DYHATPEITL TPETTPRPET ADPAESTAAE STAAGPDRPA
PESGFRTPE
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