Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Francci3_3820 |
Symbol | |
ID | 3905568 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. CcI3 |
Kingdom | Bacteria |
Replicon accession | NC_007777 |
Strand | + |
Start bp | 4578408 |
End bp | 4580264 |
Gene Length | 1857 bp |
Protein Length | 618 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 637881146 |
Product | alkaline phosphatase |
Protein accession | YP_482899 |
Protein GI | 86742499 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG3540] Phosphodiesterase/alkaline phosphatase D |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00587129 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.244243 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACCCGTG ACGCCGCGGC CGGCTCTCCG CGTTCCCGCC GATTCCCGCG GGCGCCCTCG CCGTCAGCCG CCACCGGCTC GCCGTCAGCC GCCACCGGTC AGACTGGTCG ACCGGCCGGC ACCGATCCGT CGGCACGCGC CGATCCGGGC ACCGGTCCTC GCGCCGCCGC CCGGTCCGGC CACGGGACGA ACCCGGGGGC CGATCCACGT CGCCGTGCCG TCCTGCTCGG CGGCCTCGGG CTGGCGGGCG CCGCGCTGGG CGGGGCGAGC CTGGCGGCCT GCGGCGGCTC CGGCGGTTCG ATCCCGGCCC CCGCGCCGAC CCTGCGGGCA CCCACCCCGA TCGCGGGCGT CACCGACGGG GTCTTCGGGC TCGGGGTCGC CAGCGGCGAC CCGTTGCCGG ACGGCGTCAT CCTCTGGACC CGGCTCGCGC CGAGGCCGAC CGAGGGCGGC GGCATGCCCA CGCGGGACAT TGAGGTCGAC TGGCAGATCG CGACGGACGA GGGTTTCCGC GATGTGGTGC GCGCCGGCAC GCAGACCGCG CAGACGGCGT TCGCGCATTC CGTCCACGTC GACGTCCGCG GACTCGCGCC GGAGCGTGAC TACTTCTACC GGTTCCGTGC CGGCACCGTG CTCAGTCCAG TCGGCCGGAC CCGGACGGCC GCGGCACCTG GGAGGGGACC GGAATCGACC GGCGGTGCCC TGACCTTCGC GCTGGCCTCG TGCCAGGACT TCCAGAACGG GTACTGGCCG GCCCTCGACG GCATCGCCAC CGACGCGCCG GACCTCGTCG TCCACGTCGG CGACTACATC TACGAGTACG ACCCGAAAAG CAACTACCCG GACCGGCGGC ACACCACCCC GCAGCGGCCC GGTCTGGACC AACTCCAGAC GCTGGCGGAC TACCGCAACC GGTACGGCCA GTACAAGTCC GATCCTGCCC TGCAGGCCGC TCATCACGTG GCCCCCTGGG TCGTCACCTG GGACGATCAC GAGGTCGAGA ACAACTACGC CGGACTGATC GACGAGGCCG GCGACGCCGG GGAGCAACGG CAGGACCCTG CGGTGTTCGC CCGCCAGCGT GCCGCCGCCT ACCAGGCGTA CTACGAACAC ATGCCGATCC GCGCGGAGCT GAATCCGGGA TCGCCCGACA TGCGGATCTA CCGGCGGTTC GTGTTCGGGA ACCTGGTGAC GTTCAACGTC ATGGACACCC GGCAGTACCG GACCCGGCAG CCCGGCGACT CCCCGCAGGG CATCGGGCTC GCATCCCTGG GCCGGGACAA CACGGCCGGC ACGATGGCCG GCGCCGCCCA GGAACGCTGG TTGCGCGACG GCCTGACCAC GTCGCGGACC CGCTGGAACG TCCTCGCCCA GCAGACGATG ATGGCCCAGC TGAACGGGCA GCTACCCCTC GGCGAGGGAC CACGGCTGGC CAACCTGGAT CAGAACGACG GGTACGGCCC CTACCGGACC CGGCTGCTGT CGGAGATCCG CGACAGCGGC GTGCGCAACC CGGTGGTGCT CTCCGGTGAC ATCCACTGCG CCTGGGTAAA CGACCTCCGG GTCGATTTCG ACCGGCCCGA GACGCCGGTC GTCGCGACGG AGTTCGTCTG CACCTCGATC AGCTCGGCCT TCTTCCTCGT CAGCGAGGAC TTCATCCGGC AGAACAATGC CCGACTCAAC CCGCATGTCC GGTATTTTCG CGGTGACCGG CGAGGTTACA CGCGCGTTCG CGTCACCCCG GACGAATGGC GCGCGGACAT GCGGGTCGTC GCCGACATCG CCCATCGCCA CTCGCCCACG TCCACGGATG CCACCTGGGT GGTCGAGAAC GGGCGGCCCG GCGCGCGGCC GGCCTGA
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Protein sequence | MTRDAAAGSP RSRRFPRAPS PSAATGSPSA ATGQTGRPAG TDPSARADPG TGPRAAARSG HGTNPGADPR RRAVLLGGLG LAGAALGGAS LAACGGSGGS IPAPAPTLRA PTPIAGVTDG VFGLGVASGD PLPDGVILWT RLAPRPTEGG GMPTRDIEVD WQIATDEGFR DVVRAGTQTA QTAFAHSVHV DVRGLAPERD YFYRFRAGTV LSPVGRTRTA AAPGRGPEST GGALTFALAS CQDFQNGYWP ALDGIATDAP DLVVHVGDYI YEYDPKSNYP DRRHTTPQRP GLDQLQTLAD YRNRYGQYKS DPALQAAHHV APWVVTWDDH EVENNYAGLI DEAGDAGEQR QDPAVFARQR AAAYQAYYEH MPIRAELNPG SPDMRIYRRF VFGNLVTFNV MDTRQYRTRQ PGDSPQGIGL ASLGRDNTAG TMAGAAQERW LRDGLTTSRT RWNVLAQQTM MAQLNGQLPL GEGPRLANLD QNDGYGPYRT RLLSEIRDSG VRNPVVLSGD IHCAWVNDLR VDFDRPETPV VATEFVCTSI SSAFFLVSED FIRQNNARLN PHVRYFRGDR RGYTRVRVTP DEWRADMRVV ADIAHRHSPT STDATWVVEN GRPGARPA
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