| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3792 |
|---|
| Symbol | |
|---|
| ID | 3906077 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 4543618 |
|---|
| End bp | 4545828 |
|---|
| Gene Length | 2211 bp |
|---|
| Protein Length | 736 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 637881118 |
|---|
| Product | UvrD/REP helicase |
|---|
| Protein accession | YP_482871 |
|---|
| Protein GI | 86742471 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.976756 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.84533 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGTCCG GACCGCCTGC CCTCGCCGCC CAGGCCGCCC GTGTGCGATC GGGCAACGAT
CTGCTCGCCG CGCTCGATCC CGAACAGCGG GCCGCGGCCG GAGCCCCGCT CGGACCGGTC
TGCATCCTCG CCGGCGCCGG TACAGGTAAG ACACGCACCA TCACCCATCG AGTCGCGCAC
ATGGTCGCGC AGGGGGGGGT CGGGCCGGGC CAGATCCTGG CGGTGACCTT CACGGCCAGG
GCTGCGGGAG AGCTGCGCGG CCGGTTGCGG GCCATGGGTG TCGATGGAGT GCAGGCCAGG
ACGTTCCATT CCGCGGCTCT CAAGCAACTG TTGTACTTCT GGCCGTCGGT CGCCGGGGTC
GCGCTGCCCA AGGTGGAGAA GAGCAAGATC CCGTACGTGG TGCGGGCGGC CGCCCGCCTG
CACCTGCGGC CGGACCGGGC CGAGCTGCGC GACCTCACCT CGGAGGTCGA GTGGGCGAAG
ACGACGCTTG TGACCCCGGC GGACTACGCC CGGATGGCGG CGGCGAGCGG GCGGGAGACC
GCCGCTCCCC CCGAGACGGT CGCCCGGCTC TACGCCGCGT ACGAGGAGGT CAAGCGCGAC
GCCGGTGTGA TCGACATGGA GGATCTGCTG CTGCTGACCG CGGCGATGAT CGAGGAGCAC
AGCTGGGTCG CGGCCGAGGT GAGGGCCAGA TACCGCCATT TCGTCGTTGA CGAGTATCAG
GATGTCAACG ACCTGCAACA GCGTGTCCTC GACGCCTGGC TGGGGGAGCG CGACAGCCTC
TGTGTCGTCG GGGACCCCCA TCAGACGATC TATTCGTTCA CCGGGGCGTC GCCCGAGCAC
CTGCTCGGAT TCCCGCGCCG GTTCCCGGAC GCGGCCGTGG TGCGTCTGAT CCGAGACTAC
CGGTCCACCC CCCAGGTGGT CGGACTCGCG AACACCCTGA TGCGGGCGGC CCCGGCGGCC
CGCCTCGTCG CCGCTCGCCC GGACGGTCCC GCCCCGGTGT GGCTGGAGTG CGACAGCGAG
CCGGCGGAAG CCGCCGCGGT GGCGTCCCGG ATCCGCCGGC TGCTCGACCA GGGCGTGCCG
GCGAGTGAGA TCGCCGTGCT GTACCGCACG AATGCCCAGT CCGAGGCGTA TGAGGCGGCG
ATCGGCGGGG CCGGTATCGC CTACCTGCTC CGGGGCGGGG AGAAGTTCTT CGAGCGGACC
GAGGTCGTCG CGGCCATGAG GTTGCTGCGG GCCGCGGTGC GCTCCGCCGA CACCGACCGC
CCGGAGGGAC TCACGGCCGC TGTCGCCGAC ATCCTCGCGG CGCTCGGCTG GCGGGCGGAC
CAGCCGACGG TGGGCTCGGG CGCCGAGCGG GAACAGTGGG AGAACCTCGC CGCGCTGCAC
CGGCTGGCCG GCGATCTCGC CGCCCGTTCG CCCGAGGCCG ACCTCGAGGC CTTCGTCGCC
GAGCTCGGCG ACCGCGCGAC CCACGAGCAT CAGCCGACGG TGCAGGGGGT GACCCTGTCG
ACCCTGCACA CCGCCAAGGG CCTGGAATGG GATGCGGTGT TCCTCGTCGG GCTGACCGAG
GGCACGCTTC CCCTCGTCCA TGCCAGGACC GCCGAGCAGA TCGCCGAGGA ACGTCGCCTG
CTCTACGTCG GGGTGACCAG GGCCCGTAGG CACCTCGTCC TGTCCTGGGC GCTGTCCCGG
GCGGAGGGCG GCCGGCGGTC GAGGCGGCCG TCTCGCTTCC TCGACGATCT GCGTCCGATG
CGCCGGGAGT CCGCGGCCGG CGTCCGCCAC GGGGGGCGAG GCGAGGGCAC GAGGCCCGTG
GCCGGGGCGG AGGAGACCGG CCCGGGTCGG TCCCGGAGCA GGTCGGCGGT GCGGTGCCGG
ACGTGCGGCC GGTCGTTGAC GGGTGTGCAC GCGCGGGTCG GGCGCTGCGA GGGCTGCCCC
GGCGACGTCG ACGCCGCGCT GTTCGAGCGC CTGCGGGTGT GGCGTTCGGC GCGGGCGAAG
GAACAGGGGG CACCGGCCTT CGTCGTCTTC ACCGACGCCA CGCTGCAGGC GATCGCCGAG
AGCCGGCCGG GCACGGTGGC CGAGCTCGTG CGGCTGCCCG GCATCGGACA GGCCAAACTC
GACCGTTACG GGGAGGAGGT ACTCGCCCTC GTCGCGGGGC GCACGCCGCC GGTCGGGTCG
CCGCCGGTGG TGGAGTCACT GGGGTCCGAC ACGCCGCCCG ACGCTTCGTA A
|
|---|
| Protein sequence | MMSGPPALAA QAARVRSGND LLAALDPEQR AAAGAPLGPV CILAGAGTGK TRTITHRVAH
MVAQGGVGPG QILAVTFTAR AAGELRGRLR AMGVDGVQAR TFHSAALKQL LYFWPSVAGV
ALPKVEKSKI PYVVRAAARL HLRPDRAELR DLTSEVEWAK TTLVTPADYA RMAAASGRET
AAPPETVARL YAAYEEVKRD AGVIDMEDLL LLTAAMIEEH SWVAAEVRAR YRHFVVDEYQ
DVNDLQQRVL DAWLGERDSL CVVGDPHQTI YSFTGASPEH LLGFPRRFPD AAVVRLIRDY
RSTPQVVGLA NTLMRAAPAA RLVAARPDGP APVWLECDSE PAEAAAVASR IRRLLDQGVP
ASEIAVLYRT NAQSEAYEAA IGGAGIAYLL RGGEKFFERT EVVAAMRLLR AAVRSADTDR
PEGLTAAVAD ILAALGWRAD QPTVGSGAER EQWENLAALH RLAGDLAARS PEADLEAFVA
ELGDRATHEH QPTVQGVTLS TLHTAKGLEW DAVFLVGLTE GTLPLVHART AEQIAEERRL
LYVGVTRARR HLVLSWALSR AEGGRRSRRP SRFLDDLRPM RRESAAGVRH GGRGEGTRPV
AGAEETGPGR SRSRSAVRCR TCGRSLTGVH ARVGRCEGCP GDVDAALFER LRVWRSARAK
EQGAPAFVVF TDATLQAIAE SRPGTVAELV RLPGIGQAKL DRYGEEVLAL VAGRTPPVGS
PPVVESLGSD TPPDAS
|
|---|
| |