Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Francci3_3755 |
Symbol | |
ID | 3906039 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. CcI3 |
Kingdom | Bacteria |
Replicon accession | NC_007777 |
Strand | + |
Start bp | 4503677 |
End bp | 4504693 |
Gene Length | 1017 bp |
Protein Length | 338 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 637881081 |
Product | sigma 28 subunit |
Protein accession | YP_482835 |
Protein GI | 86742435 |
COG category | [K] Transcription |
COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family [TIGR02980] RNA polymerase sigma-70 factor, sigma-B/F/G subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACGTCGA CCGGGAGGAC GCCGACCCCA CCGCGCACGG TACCTGATCG CGACGTAGCC GATCGCAACG TAGCCGATCG CGACCCGGTG TCCACGGTGG ACCCGGTAGC GGCGTTGAGC CAACGGGGAT CCGGGCTCGA CGACCAGCCG GGGATCGACA GCGATCTCGG CCCCGAGGTG ACGACCCAGG CGCCACCGAA CCCGGCGGTG GACGGTCCGG CGATCGACGG GGAGAGCGAT CGGCCCGAGC GCGCGCACTC GCCCGACCGG GCCCTGGCCC GCACGCTGTT CGTCCGCCTC GCCGAGCTAC CCGAGGACGA TCCCGAACGC TCCGCCGTCC GCGATCAGCT CGTCCGGATG CACCTACCGC TGGTGGAGTA CCTCGCCCGC CGCTTCCGTA ACCGGGGCGA GCCGCTCGAC GACCTCGTCC AGGTGGCCAC CATCGGATTG ATCAAATCGG TGGACCGGTT CGATCCGGAA CGTGGGGTGG AGTTCTCGAC CTACGCCACC CCGACCATTG TCGGTGAGAT CAAGCGGCAC TTCCGGGACA AGGGCTGGGC CATCCGGGTC CCCCGCCGCC TTCAGGAGCT CAAACTCTCC CTGACGAAGG CGACCTCCGA GCTCTCCCAG ACGCTGGGCC GCTCCCCCAC GGTGAGCGAG ATCGCCCGGC ATCTGCAGAT GAGCGAAGAT GACGTCCTCG AGGGGCTGGA GTCGGCGAAC GCCTACTCGG CGGTCTCCCT CGACGCGCCG GACTCCGGCG ACGACGAGGC GCCCGCCGTC GCGGACACCC TCGGCGTCCA GGACGAGTCC CTGGAGGGCG TCGAGTACCG CGAGTCCCTC AAGCCGCTGT TGGAGAAGCT CCCTGCGCGG GAGAAGCGCA TCCTGCTGCT GCGGTTCTTC GGCAACATGA CCCAGTCCCA GATCGCGACC GAGCTCGGCA TCTCCCAGAT GCACGTTTCC CGGCTCCTGG CCCGGACCCT GGCCCAGCTG CGGCGCGGCC TGCTCGAGGA CGGCTGA
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Protein sequence | MTSTGRTPTP PRTVPDRDVA DRNVADRDPV STVDPVAALS QRGSGLDDQP GIDSDLGPEV TTQAPPNPAV DGPAIDGESD RPERAHSPDR ALARTLFVRL AELPEDDPER SAVRDQLVRM HLPLVEYLAR RFRNRGEPLD DLVQVATIGL IKSVDRFDPE RGVEFSTYAT PTIVGEIKRH FRDKGWAIRV PRRLQELKLS LTKATSELSQ TLGRSPTVSE IARHLQMSED DVLEGLESAN AYSAVSLDAP DSGDDEAPAV ADTLGVQDES LEGVEYRESL KPLLEKLPAR EKRILLLRFF GNMTQSQIAT ELGISQMHVS RLLARTLAQL RRGLLEDG
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