| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3740 |
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| Symbol | |
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| ID | 3903843 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | + |
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| Start bp | 4475443 |
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| End bp | 4477824 |
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| Gene Length | 2382 bp |
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| Protein Length | 793 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637881066 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_482820 |
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| Protein GI | 86742420 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGACCGCCT CTCTCCCTCC CCCGTGCCGG TTCCGTCTGA TCCGGATTGC CCAGCTCGTC
CTGATTGTCG CCACGGTCTA CCTGTCCGTT TCCGCGTTCG TCACCGTGCC CCACATCGGC
AACGAGACCG GGTCGCTGCG TTACGGCGTC GCCCTCGGCT CGGGCCTGAT CTGCCTGGCG
CGGGCGGTGT TGATCCGCGG CGAACGCCTC CCCTGGGCCC TGCTCGGTAC CGGGCTCATC
AGCTACGGAG GCGCGACGAT CTACTACAAC GCGGCGGTCG CCGGCCGGCA GGACGACGAC
CTCGGGCCGT CGCTGGCCGA TCTCGGCTGG CTGCTCTTCT ATCCGGCGTG CTATGTCGCC
GTCATCCTCC TGCTACGCAG AAGAGTGCTC CGGCTGCACA CGAGCGTCTG GATGGACGCG
CTCGTCGGCC TGCTCGGCGT GGCCGCGCTG ACCAGCGGCA TCGGCGTGGC GATGGCGAAC
GCGTATCCGC GCTACAGCGC GTGGACGATG ACGGTGAACC TGATCTATCC GCTCGCCGAC
CTGCTGCTGA TCCTGCTGAT CGTCACGGTG TTCAGCCTGC TGGGCTGGCA TCCCGGCCGG
GTGTGGTGGC TGCTGGGCAT CGGGCTGGTG GGCTTCGCGA TAGCCGACTC GCTCCTGCTG
GTCATCGTCA CCACGGACAA GGACCCCGGG TCCGGCCTCC TCGGCACGCT GTGGCTGTTC
TCGGTGCTCA TGCCGGCCCT GGCCGCCTGG CTGCGACCGC GCTGGCACCC ACCGGCCAAG
ATGTCCGGCT GGGGCGTCAT CGCGGTCCCA CTGGTGCTCA CCGTGATCGC GCTCGGTCTG
CTCGTCCTCG GCGCCACGGT CCAGCTGCCA AAGGTCACCG TCGGACTCGC CGCGGCCACG
GTGCTGACGG CCCTGGCCCG CGCCGCGTTC ACCTTCATCG AGGTCCAGCA GCTCGCCGAA
AGCAAGGTGC TGGCCCGCAC TGACGAGCTG ACGGGCCTGG CAAACCGGCG TGGCTTCATC
GAACGGCTGA CGAAGGCCGA GCAGCGCGCC ACCGGGGTGG GCACCTTCGC CCTCCTCCTG
CTGGACCTTG ACCGGTTCAA GGAGATCAAC GACTCGCTGG GGCATCAGGT GGGCGACGCG
CTACTGGCGC AGGTCGGAAC CCGTATCTCC GACGCCCTGC GTCCCGGCGA CCTGCATGCC
CGCCTGGGCG GCGACGAGTT CGCGGTCCTG CTCGAACACG CGGACATCGA GGCCGCGAAA
CGCGTCGCCG ACCGGGTGCT GGCCGTGCTC GGCGATCCCT TCGACGTCGG CGGGGTGACC
CTGCACGTCG GCGCGAGCAT CGGCGCCGCC GTGTACCCCG ACCACGCCGA GGACGCCCAC
ATCCTGTTGC AGCGTGCGGA CGTGGCCATG TATGCCGCGA AGTCGGGCCG CACCGGCGTG
GAGTCCTACC GTCCCGGCTC CGACGTGAAC AGCCTCGTCC GCCTCGACAT GATCGAGTCC
CTGCGCGCGG CGCTCGGCAC CGGCCAGCTG GAGGTGCACT ACCAGGTCAA GGTCGACCTC
GATTCCGGGC AGGCAAATGC CGTGGAGGCC CTGGTCCGCT GGCGGCATCC CAGCCGCGGC
CTGCTCGGGC CAGAGGAATT CGTCCCCCTG GCCGAACAGG CCGGTTTCAT CCGGATGCTG
ACCATCGAGG TGCTGGAGAC CGCCCTGGGC CAGTGCCGGC AGTGGCACTC CGCCGGATTC
GACGTAGCGG TGGCGGTGAA CCTGTCCGCC TCGGACCTGC TGGACCGTGG CTTTCCCGAA
CAGGTCAGCG GCATGCTCTC CGGCTTCGGG CTGAGCCCGA CGGCACTCGA GCTGGAGATC
ACCGAGACCA CGTTGATGCT CGACCGGGTC CGCACGGCCG CCGTACTCGG GGAGCTGCGC
GACCTGGGGA TCGGAATCGC CGTCGACGAC TACGGCACCG GGTACTCCTC CCTGGCCAGG
CTCTGGGAGC TGCCCGTTGA CGTGCTGAAG CTGGACAAGT CATTCATCCA ACGCATGGAG
GTCGATGGCC GGGCCGAGGC GATCGTCCGT TCGACGGTCG GGCTCGCCCA CGCGCTCGGC
CTGCGCATCG TCGTCGAGGG CGTGGAGACC GCTGGAGCGA TGCGGATGCT GCGGGATTTC
GGCTGCGACC TGGCTCAGGG CTACTTCCTC GGCCATCCGG GCCCATCCGA GCAGGTGACC
GAGCAACTGC GGCGACGGGC GCCGTCGGCT GGCATGATCG ATCCGGAGAC GATCGGCCGG
ACGGAGGAAT GTCCCGGCGA TCTCTCCCCG ACGATGGAGA GTGCCGTGCT GAACGCCCCA
GTCGCCCCGG ATCGGACGCC GGCGGTCAAG TCGTGGCGCT GA
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| Protein sequence | MTASLPPPCR FRLIRIAQLV LIVATVYLSV SAFVTVPHIG NETGSLRYGV ALGSGLICLA
RAVLIRGERL PWALLGTGLI SYGGATIYYN AAVAGRQDDD LGPSLADLGW LLFYPACYVA
VILLLRRRVL RLHTSVWMDA LVGLLGVAAL TSGIGVAMAN AYPRYSAWTM TVNLIYPLAD
LLLILLIVTV FSLLGWHPGR VWWLLGIGLV GFAIADSLLL VIVTTDKDPG SGLLGTLWLF
SVLMPALAAW LRPRWHPPAK MSGWGVIAVP LVLTVIALGL LVLGATVQLP KVTVGLAAAT
VLTALARAAF TFIEVQQLAE SKVLARTDEL TGLANRRGFI ERLTKAEQRA TGVGTFALLL
LDLDRFKEIN DSLGHQVGDA LLAQVGTRIS DALRPGDLHA RLGGDEFAVL LEHADIEAAK
RVADRVLAVL GDPFDVGGVT LHVGASIGAA VYPDHAEDAH ILLQRADVAM YAAKSGRTGV
ESYRPGSDVN SLVRLDMIES LRAALGTGQL EVHYQVKVDL DSGQANAVEA LVRWRHPSRG
LLGPEEFVPL AEQAGFIRML TIEVLETALG QCRQWHSAGF DVAVAVNLSA SDLLDRGFPE
QVSGMLSGFG LSPTALELEI TETTLMLDRV RTAAVLGELR DLGIGIAVDD YGTGYSSLAR
LWELPVDVLK LDKSFIQRME VDGRAEAIVR STVGLAHALG LRIVVEGVET AGAMRMLRDF
GCDLAQGYFL GHPGPSEQVT EQLRRRAPSA GMIDPETIGR TEECPGDLSP TMESAVLNAP
VAPDRTPAVK SWR
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