| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3678 |
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| Symbol | |
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| ID | 3905362 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | + |
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| Start bp | 4411051 |
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| End bp | 4413069 |
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| Gene Length | 2019 bp |
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| Protein Length | 672 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637881004 |
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| Product | alpha amylase, catalytic region |
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| Protein accession | YP_482759 |
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| Protein GI | 86742359 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.763851 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGATCG GACGTTCAGT AGGCCGGGTT GTCGTCTCCG ATGTGACACC GACCGTCTCG
TGTGGCCAGT GGCCGGCGCG GGCGGTCGCG GGCGAAATTC TCACCGTCGG TGCAACGGTG
TTCCGCGAGG GTCATGACCT CATCGGCGCG AACGTCGTGC TGTCAGGTCC CGACGGGCAG
GGAACTCCGT TCATCCGGAT GCGCTCCGCC GGCCCCGGTA CCGACCGTTA TGAGGCGGAG
ATCACCGCCG GGACCGAAGG CCTGTGGGGA TATCGGGTCG AGGCGTGGGC CGATCCGGTC
GCCACCTGGC GGCACGGTAT TGCCCTCAAG GTCGGCGCGG GCCAGAGCAC GGACGAACTC
GCGGTGGACT TCGAGGACGG TGCGCGCCTG CTGCTGCGGG CCCTGCCCGC AGTCCCCGAA
CCGCGCCGGG CGGAGATCGC TCTCGCCGTG GCCGCGCTGC GCGACGACGA CTGCACCGAC
CCCCGCGACC GGATCGCCGC GGCCCTCGAT CCCCAGCTGG TGAGCCTGCT GGACGCCTGT
CCGCTGCGCG AACTGGTGAC CCGCTCACCG CTGTACCGGC TGTGGGTGGA TCGTCGGCGC
GCCCTCTACG GCAGCTGGTA CGAGATGTTC CCGCGCTCGG AGGGCGCGAG CCTCGACCCG
CCCCGGTCCG GGACCTTCCT CACCGCGGCC GAACGCCTGC CCGCGGTCGC GGCGATGGGC
TTCGACGTGG TGTACCTGCC GCCGATCCAT CCGATCGGCG AGGTCAACCG CAAGGGTCCC
AACAACACCC TCACCCCCGG TCCGACGGAC CCCGGCTCGC CGTGGGCCAT CGGCAGCGAA
CACGGCGGCC ACGACGCCGT GCATCCCGAC CTCGGCACGA TCGACGACTT CGACCTGTTC
GTCGCCCGGG CACGCTCGCT GGGCATGGAG ATCGCGCTGG ACCTCGCCCT GCAGTGCGCG
CCGGACCATC CATGGGCGAA GCATCACCCG GAGTGGTTCG TCGTGCGTAG TGACGGCTCC
ATCGCCTACG CGGAGAATCC GCCGAAGAAG TACCAGGACA TCTATCCGCT GAACTTCGAC
GCCGACCCGA CCGGGCTCTA TCAGGAGATC CTGCGCGTCG TCCGGTACTG GACTGCACAC
GGAGTACGAA TCTTCCGTGT CGATAATCCG CATACAAAGC CCGTCGAGTT CTGGGAATGG
CTCATCGCCC AGGTGAAGTC GACCGAACCA GATGTGCTCT TCCTCGCGGA GGCATTCACC
CGGCCGGCGA TGATGCACAC GCTCGCCAAG GTCGGTTTCA CCCAGTCATA TACCTATTTC
ACCTGGCGCA ACACGAAGTG GGAGCTCGAG AAGTACGCGC GCGAACTGGT GTCGGCCGCG
CACTACATGC GGCCGAACTT CTTCGTCAAC ACCCCGGACA TCCTGCCGGA GTACCTGCAG
CACGGCGGCC CGGCGGCGTT CCGGATCCGG GCGGTGCTCG CTGCGACGCT GTCACCGACC
TGGGGCGTCT ACTCCGGGTA CGAGTTGCGC GAGAACACCC CGGTCCGACC GGGCAGCGAG
GAGTACCTGG ACTCCGAGAA GTACCAGTAC CGGCCACGCG ACTGGGCCGC GGCGGAGCGT
GCGGGCCAGT CGCTCGCGCC GTACCTGACC AGACTCAACC AGATCCGCCG TGCCCACCCC
GCCCTGCAGT GGTTGCGCAA CCTGCACTTC CACCATGCCG ACGGGGACGA GATCATGGTC
TTCTCCAAGC GGGTGGACTC CCTGCGGGCG GACGGCACGG ATCCCGGGGA CACGGCCGCC
GCCGACACCG TGCTCATCGT CGTCAACCTC GACCCGCACG CTCCCCGGGA GACCACCGTG
CGGCTCGACA TGCCGGCCCT CGGCCTCGGC TGGGAAGACT CCTTCGAGGT CACCGATGAG
ATCACTGGTG CCACCTACGC GTGGGGCAAG CAGAACTACG TGCGGCTGGA CCCGGCGGTC
GAGCCCGCGC ACGTCTTCGC TGTGCGGGCC CGGTCGTGA
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| Protein sequence | MMIGRSVGRV VVSDVTPTVS CGQWPARAVA GEILTVGATV FREGHDLIGA NVVLSGPDGQ
GTPFIRMRSA GPGTDRYEAE ITAGTEGLWG YRVEAWADPV ATWRHGIALK VGAGQSTDEL
AVDFEDGARL LLRALPAVPE PRRAEIALAV AALRDDDCTD PRDRIAAALD PQLVSLLDAC
PLRELVTRSP LYRLWVDRRR ALYGSWYEMF PRSEGASLDP PRSGTFLTAA ERLPAVAAMG
FDVVYLPPIH PIGEVNRKGP NNTLTPGPTD PGSPWAIGSE HGGHDAVHPD LGTIDDFDLF
VARARSLGME IALDLALQCA PDHPWAKHHP EWFVVRSDGS IAYAENPPKK YQDIYPLNFD
ADPTGLYQEI LRVVRYWTAH GVRIFRVDNP HTKPVEFWEW LIAQVKSTEP DVLFLAEAFT
RPAMMHTLAK VGFTQSYTYF TWRNTKWELE KYARELVSAA HYMRPNFFVN TPDILPEYLQ
HGGPAAFRIR AVLAATLSPT WGVYSGYELR ENTPVRPGSE EYLDSEKYQY RPRDWAAAER
AGQSLAPYLT RLNQIRRAHP ALQWLRNLHF HHADGDEIMV FSKRVDSLRA DGTDPGDTAA
ADTVLIVVNL DPHAPRETTV RLDMPALGLG WEDSFEVTDE ITGATYAWGK QNYVRLDPAV
EPAHVFAVRA RS
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