| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3647 |
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| Symbol | |
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| ID | 3905328 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | - |
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| Start bp | 4355767 |
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| End bp | 4357887 |
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| Gene Length | 2121 bp |
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| Protein Length | 706 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 637880970 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_482728 |
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| Protein GI | 86742328 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGCGCGA CGGCCGGTAC GGCCGACGAA TCCGGCGTGG CTTCGGCGGC GGCTTCGGCG
GACGAGCGGG CCCGCGCCGC CAGCCTCGCC CGCGAGCTCG ACGAGCACGC GTACCGCTAC
TACGTGCTCG ATTCCCCGAC GATCTCCGAT GCCGAGTACG ACCGGTTGAT GGCGGAGCTC
GCCGCGCTGG AGGAGCGGCA TCCCGACCTG CGCACACCGG ACTCGCCGAC GCAGAAGGTG
GCCGGCTCCT ACTCGACCCT GTTCACCCCG GTCGAGCATC TCGAACGGAT GCTGTCCCTG
GAAAACGTCT TCGACGACGA CGAGTTCCAC CAGTGGGCGG CGCGCGTGGC CCGGGAAAGC
GAGGTCGACG CCTGGCTCTG CGAGCTGAAG ATCGACGGGC TTGCCGTGGA CCTCGTCTAC
GAGGATGGTT ACCTGGTGCG TGCCGCGACG CGCGGCGACG GCCGGACGGG GGAGGACATC
ACCCCCAACA TCCGCACCCT GGCGAGCGTG CCGGTACGGC TGCGCGGGCC GCGGGTGCCC
GGGCTGCTGG AGGTGCGGGG CGAGGTCTTC TTCCCGACCG CGAAGTTCGC CGAGCTCAAC
GCCGGGCTGG TGGCCGTGGG GGGCAAACCG TTCGCGAACC CGCGTAACGC CGCGGCCGGA
TCCCTGCGGC AGAAGGATCC CCGGGTCACC GCCACCCGGC CGCTGGAGAT GATTGTCCAT
GGCCTGGGCG CGCAGCGCGG CTTCGAGGTC ACGTCCCAGT CGGCGGCCTA TGCCCGCTTC
GCGGAGCTCG GGCTGCCCGT CGCCACCCAC TTCGAGGTCC TGGCGACGGT GCCCGGCGTG
CTCGACTACG TGCACCGGTG GGGCGACGCG CGCCACGACG TGGTGCACGA GATCGACGGA
GTGGTCGTCA AGGTCGACTC GTTCGCCCTG CAACGCCGGT TGGGCTCCAC CTCGAAGTCC
CCCCGCTGGG CGGTGGCCTA CAAGTATCCG CCGGAGGAGG TCACGACCAA GCTGCGCGAT
ATCCGGGTGA ACGTGGGCCG CACCGGCCGG GTGACCCCCT TCGGGGAGCT GGAGCCGGTC
CTGGTCGCCG GGTCCACGGT GGGCCTCGCG ACCCTGCACA ACATCGACGA GGTCGGTCGC
AAGGGGGTGC TCATCGGGGA CACGGTCGTC CTGCGCAAGG CCGGGGACGT CATCCCGGAG
ATCGTCGGCC CGGTCGTCGA CCTGCGAGAG GGTTCCGAGC GGGCCTTCGT GATGCCCACG
CGCTGCCCGG AGTGCGGCAC CGAGTTGGTG CGGCCCGAGG GCGAGGTCGA CATCCGTTGC
CCGAACACCG TCTCCTGTCC CGCGCAGTTG CGGGAGTCGA TCTTCCATTT CGCATCCCGG
GGGGCGATGG ACATCGACGG GCTCGGGTAC GAGACGGCGA CCGCCCTGCT CGAGGCGGGC
CGGGTGCGTG ACATCGGCGA CATCTTCCAC CTGACGCCCG AGTCCTTCGA GGGGCTGCGC
GGGTTCGCGC AGAAGAAAAT CGACCAGATT CTGCGGGGGG TCGAGGCCGC GCGGCACCGG
CCGCTTTGGC GGCTGCTGGT CGGCCTGTCG ATCCGCCACG TCGGGCCCAC GGCGGCGCGG
GCGCTGGCCC GGGAACTGCG GTCGCTGGAA GCGATCGCCG CCACGTCGGC CGAGGACCTC
GCCGCGGTCG AAGGGGTCGG TCCGAAGATC GCCGGCGCGG TGCTCGACTG GTTCGCCGAT
GAACGGCACC GCGACATCCT CGCCAGGATC GCCGCCGGCG GGGCACGGCT CGCCGACGTC
GGCGCGGAGG AGGGCCCACG TCCCCTCGAC GGCGTCACCG TCGTCATCAC CGGCACGCTC
ACCGACTGGA GCCGCGACTC GGCCAAGGAG GCGGTCGAGG CGCGCGGCGG CAAGGTCACC
GGCTCGGTGA GCAGGAAGAC CACCGCCGTC GTCGTCGGCG CGGATCCGGG GGCCTCGAAG
TACGACAAGG CGCGCAGTCT CAGGATCCCC ATGCTGGACG AGGCCGGATT CGCCGTTCTG
CTGGCGCAGG GGGTCGACGC GGCCAGCAAG CTCGCCGTTC CCGCCGACGG TCCCGAGAAG
GCCGAGACCC CGGTGGAATA A
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| Protein sequence | MSATAGTADE SGVASAAASA DERARAASLA RELDEHAYRY YVLDSPTISD AEYDRLMAEL
AALEERHPDL RTPDSPTQKV AGSYSTLFTP VEHLERMLSL ENVFDDDEFH QWAARVARES
EVDAWLCELK IDGLAVDLVY EDGYLVRAAT RGDGRTGEDI TPNIRTLASV PVRLRGPRVP
GLLEVRGEVF FPTAKFAELN AGLVAVGGKP FANPRNAAAG SLRQKDPRVT ATRPLEMIVH
GLGAQRGFEV TSQSAAYARF AELGLPVATH FEVLATVPGV LDYVHRWGDA RHDVVHEIDG
VVVKVDSFAL QRRLGSTSKS PRWAVAYKYP PEEVTTKLRD IRVNVGRTGR VTPFGELEPV
LVAGSTVGLA TLHNIDEVGR KGVLIGDTVV LRKAGDVIPE IVGPVVDLRE GSERAFVMPT
RCPECGTELV RPEGEVDIRC PNTVSCPAQL RESIFHFASR GAMDIDGLGY ETATALLEAG
RVRDIGDIFH LTPESFEGLR GFAQKKIDQI LRGVEAARHR PLWRLLVGLS IRHVGPTAAR
ALARELRSLE AIAATSAEDL AAVEGVGPKI AGAVLDWFAD ERHRDILARI AAGGARLADV
GAEEGPRPLD GVTVVITGTL TDWSRDSAKE AVEARGGKVT GSVSRKTTAV VVGADPGASK
YDKARSLRIP MLDEAGFAVL LAQGVDAASK LAVPADGPEK AETPVE
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