| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3628 |
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| Symbol | |
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| ID | 3904184 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | - |
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| Start bp | 4332569 |
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| End bp | 4334218 |
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| Gene Length | 1650 bp |
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| Protein Length | 549 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637880951 |
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| Product | putative alpha-isopropylmalate/homocitrate synthase family transferase |
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| Protein accession | YP_482709 |
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| Protein GI | 161353753 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
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| TIGRFAM ID | [TIGR00977] 2-isopropylmalate synthase/homocitrate synthase family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.883953 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.554164 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGCCGGGG CGGAACGACC CAAGATCCTT GCGGAGGGGC GCCCCGTGCG GCCATACGAT
CCCGATTCCC TGCACGTCTA TGACACGACA TTGCGGGACG GTACCCAGCA GGAGGGGCTG
TCGCTCTCGG TCGGCGACAA ACTCGCGGTG GCCCGTCACC TGGACGATCT CGGCGTCGGT
TTCATCGAGG GCGGCTGGCC GGGATCGAAC CCGAAGGACG CGGAGTTCTT CACCCGGGCG
CGCGGCGAAC TGAACCTGAC GACCGCCGTG CTGACCGCCT TCGGGGCCAC CCGGCGGGCG
GGCCGCGCCG CCGCGGACGA CCCCCAGGTG GCGGCGCTTC GGGACGCGGG GACCTCGGTG
GTCTGCCTGG TCGCCAAGTC GGATCTGCGC CATGTCGAAC GTGCCCTGCG CACCACCCCG
GCCGAGAACC TCGCGATGAT CCGGGACACC GTCGCGCATC TGCGCGCGGA GGGAAAGCGG
GTGTTCGTTG ACGCCGAGCA CTTCTTCGAC GGCCATCGGG TGTATCCCGA CTACGCTCTT
GAGGTCGTCT CCGTTGCGGC CGAGGCCGGT GCCGAGGTCG TCGTGCTGTG CGACACGAAC
GGTGGCATGC TCCCGACGCG GATCGGCGCG GTCGTCGCCG ATGTCCTCGC CGCAACCGGC
GCCCGGCTCG GTATCCACTG CCACGACGAC GCCGACTGCG CGGTCGCGAA CACCCTGGTG
GCGGTGGAGG CCGGCGTCAC CCACGTGCAG GGCACCGCAA ACGGCTACGG CGAGCGGTGC
GGGAACGCCA ACCTGCTGAG CGTCATCGCG GGCCTGGAGA CCAAGTTGGA CCGGGCCGTG
CTGCCGCCCG GGCGGCTGCG TGAGCTCGTC CGGGTCTCTC ACGCGATCGA CGAGGTCACC
AACTCCGTGC CCGACCCGCA CCGGCCGTAC GTCGGGGCCA GCGCCTTCGC GCACAAGGCC
GGCCTGCACG CCAGTGCCGT CAAGGTCGAT CCGGACCTGT ACCAGCACAT CGACCCGGCG
GTCGTGGGCA GTGACATGAG GATGCTGGTC TCGGAACTCG CCGGTCGGGC GACCATCGAA
CTGAAGGGCC GTGAGCTCGG CCTCGACCTG TCGAACCAGC GTGAGGCGCT CGGACGGGTG
GTGGACCTGG TCAAGGAGCG GGAGGCAGCC GGATACGTCT ACGAGGCCGC GGAGGCCTCC
TTCGAACTCC TGCTGCGCGA CGAGGTGACC GGCCGGCAGC GGTTCTACAC CCTCGAATCC
TGGCGCGTCA TCGTCGAGCA GCGTCCGGGC GGCGAGGTGG CCAGCGAGGC GACGGTGAAG
CTCACCTCGC ACGGCGAACG CCACGTCGCG ACGGCGGAGG GGAACGGACC GGTCAACGCT
CTCGACACGG CACTGCGCAA CGCGCTGGAG AAGGCGTATC CGGGGTTGGC CGATCTGGAC
CTGGTGGACT ACAAGGTTCG GATCCTCGAC GGCAAGCAGG GGACCGGCGC GGTGACCCGG
GTCCTGCTGG GAACCAGCGA CGGCCGCGAG CGCTGGGACA CGATCGGCGT GGACGAGAAC
ATCATCGCAG CCTCCTGGGC GGCCCTGGAG GACGCTGTCG ACTACGGACT GCGGCGGCAG
GGGGAGAGCC CGGACCCGGT CGCGCCCTGA
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| Protein sequence | MAGAERPKIL AEGRPVRPYD PDSLHVYDTT LRDGTQQEGL SLSVGDKLAV ARHLDDLGVG
FIEGGWPGSN PKDAEFFTRA RGELNLTTAV LTAFGATRRA GRAAADDPQV AALRDAGTSV
VCLVAKSDLR HVERALRTTP AENLAMIRDT VAHLRAEGKR VFVDAEHFFD GHRVYPDYAL
EVVSVAAEAG AEVVVLCDTN GGMLPTRIGA VVADVLAATG ARLGIHCHDD ADCAVANTLV
AVEAGVTHVQ GTANGYGERC GNANLLSVIA GLETKLDRAV LPPGRLRELV RVSHAIDEVT
NSVPDPHRPY VGASAFAHKA GLHASAVKVD PDLYQHIDPA VVGSDMRMLV SELAGRATIE
LKGRELGLDL SNQREALGRV VDLVKEREAA GYVYEAAEAS FELLLRDEVT GRQRFYTLES
WRVIVEQRPG GEVASEATVK LTSHGERHVA TAEGNGPVNA LDTALRNALE KAYPGLADLD
LVDYKVRILD GKQGTGAVTR VLLGTSDGRE RWDTIGVDEN IIAASWAALE DAVDYGLRRQ
GESPDPVAP
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