| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3617 |
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| Symbol | |
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| ID | 3904171 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | - |
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| Start bp | 4317105 |
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| End bp | 4319564 |
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| Gene Length | 2460 bp |
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| Protein Length | 819 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 637880938 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_482698 |
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| Protein GI | 86742298 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCGTCG ACGCCGCCGC GATCGCCGCG GGCCTGACCG CGACACTGAG TTGTGCCCGG
GCCGGTCGCC GTCTCGGTCG AGTACGGGGC CGCTGGTTGG TGTGGCTGTC CTTCGCGCTG
GCGACCTGGA CGGTTGGACA GGCCGGATGG ATGCTGCACC GCTGGGACGG GGCATCGGTC
GGAGGGCGGA CGGCGACGGA TGCCGGGTAT CTCACCGACG CCGGCCAACT CGCCATGCCG
GTCCTCGCAC TCGCCGCCTT CGCGGCTGTT CCCGCGGGTC GGGCGCGTCG ATCACGACCG
CGCGCGGGCG TGCTGGCGCC GGCAGGGATG GCCGGCCTCG CCGGGGGCAC CCACCGCTGG
CCGCCGAGTT CCTCGCGGCT CACCCGCGTC GCCGGGGCGG GCGGCGAGGG GGTGGCCGCC
GCCTACCCGC GCGCCAGTCC GGCCACCGCG TTCGACGAGG TCATACTCGG CAACTCCCTG
TTCCTGCTCG CCTGGTCCGG GGTGCTCGCC GGGATCGACG AAGTGGACTC CTCCCGCCCG
CCGCAGCCGG TGGAGCATCT CCTCGCGGTT GCGCATCCGA TCGTCGTGCT GCTATTGATC
ATCGCATTCC TGCACGTGGC AGGCTTCCGG CAACCGGTGG ACCTGCCCGC CGTCGCGATC
GCCGGAACCG GACTGGTGTG CCTCGCGGTC GCCGGCGTAT GGATCGTTCA GCTCGACGGC
AGGGATCCCA CGATGACGGG TTCCTGCTCG GTCGCCGGTG CCCTGTTGAT CGTCCTTGCG
GCATCGCGTG CCGGCCGGGG GGACGGCCGG GAGAACGGCT GGGAGGACGG CCGCCGGTCT
CGCCGGTGGC CCGTTCACGG CGAACTGCTC GGATGGCTGT GGCCGGCGGT CCCCTATGTC
GCCGCGGCCG TGGTCGCGGC GCTTCTGCTG GGGCGGGCCC ACGGCGGAGT CATTCTCGAT
CCGGTCGAGA TTATCGGGGG TGCGACGCTC GTCCTCACCG TCCTCGTCCG GCAGCTGACG
ACCCTGCGGG TGAGTCAGCG GTTGGCGAGC CGGGTCGGCG AGGCCGAGCA CGAGGTGCGG
CACTGGACAT CCCATGACCC GTTGACCGAG CTGGCCAACC GCACCCTGTT CCACCAGCGG
CTCACCGACG CCCTCGCCGC GAGCCGCCAC GACGGCCGTG ACGTGGCCGT CCTGTACTGC
GACCTCGACG ACTTCCGGGT CGTCAACGAC AGCCTCGGGC ACGCCGCAGG TGATCATCTG
CTGCGCGCGG TCGGGCAACG GCTACGACAC TGCGTAGGCA CGTCGGACAC CGTGGCGAGG
CTCGGCTCCG ACGAGTTCGC CGTGCTGTTG GACGGTGGGC GGGAACTGCC CGAGACCGTC
GCCGAACGGG TCCTGGCCGC GCTGCGCCAG CCGGCGCAGG CCGCCGGTCA CCTCTGGCCG
GTCCGCGGGA GTGTGGGGCT GGTCGTCGCG TGCCGGACCC AGGAGACCAC CGAGGCGCTG
CTCCGGCGGG CCGACACGGC CGTCCACACG GCAAAACGAA CGGGAAAGAA CCGTCTGGTG
GTCTACCGGC CCGGACTGTG CCCGCCCAGC GCCGGCACGC ACCTCGCCGA CGCCTTGGCC
ACCGCCCTGC GCAGGGGAGG ACGGTCGGCC GGCTTCGACG TGCACTACCA GCCCATCGTG
CGGCTGCGCG ATCGCAGTCC GGTCGCCCTG GAGGCCCTCG CCCGATGGAC GGAGCCGGGG
CGTGGACCGG TGCCACCGGG CACCTTTGTC GCGGCCGCGG AGGACGGCGG CATCGTCGGC
GCCCTCGACG ACATGGTCCT CACCCAGGCC TGCGCGGAGG TCGCCGTGGC GTACCCGGCC
TCGGCACTGC GGCTGCACGT GAACGTCTCA GCCAGCAGGA TCGCCGACAC CACGCTGCTC
GACAGCGTCG CCCAGGCGCT GGCGGCCAGT CGGTTCGACC CGGGCAGGCT GGTGGTCGAG
ATCACCGAAA CGAGCCGGAT TGACGATCTG CGCGGCGCAC GCGAGGTGTT GAACGAGGTT
CGTGCGCTGG GGGTGGCGGT CGCGCTCGAC GATGTCGGTG CCGGCCACAG CACATTGGCC
GCCCTCCATC AACTGCCGGT GGACGTCGTG AAGCTCGATC GGACGCTGCT CGAACCACCG
CCCAGGGACG GACACCGGGT GGCGACGATG CGTCGATCGA TGATCAGTCT CGCGCACGCC
CTCGGTGCCG TCGTCGTGGC CGAGGGCATC GAGCGGGAAG GACAGATCGC CGAGCTCGAG
GAGCTGGGTT GCGAGCTGGG TCAGGGATAC TTCTTCGCCC GACCTGGTCC GCTCGCGTCG
CTCACGATCC GGCGCTGGGT TCCGCCTACG ATCCCCGGTG GTACGGACAG CCCTGACTCC
GCCGAGGTGC CCGATTCGCC GCCGGATCCG CCGGAGTCCT CCGCCACGAG CGGGGAGTGA
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| Protein sequence | MLVDAAAIAA GLTATLSCAR AGRRLGRVRG RWLVWLSFAL ATWTVGQAGW MLHRWDGASV
GGRTATDAGY LTDAGQLAMP VLALAAFAAV PAGRARRSRP RAGVLAPAGM AGLAGGTHRW
PPSSSRLTRV AGAGGEGVAA AYPRASPATA FDEVILGNSL FLLAWSGVLA GIDEVDSSRP
PQPVEHLLAV AHPIVVLLLI IAFLHVAGFR QPVDLPAVAI AGTGLVCLAV AGVWIVQLDG
RDPTMTGSCS VAGALLIVLA ASRAGRGDGR ENGWEDGRRS RRWPVHGELL GWLWPAVPYV
AAAVVAALLL GRAHGGVILD PVEIIGGATL VLTVLVRQLT TLRVSQRLAS RVGEAEHEVR
HWTSHDPLTE LANRTLFHQR LTDALAASRH DGRDVAVLYC DLDDFRVVND SLGHAAGDHL
LRAVGQRLRH CVGTSDTVAR LGSDEFAVLL DGGRELPETV AERVLAALRQ PAQAAGHLWP
VRGSVGLVVA CRTQETTEAL LRRADTAVHT AKRTGKNRLV VYRPGLCPPS AGTHLADALA
TALRRGGRSA GFDVHYQPIV RLRDRSPVAL EALARWTEPG RGPVPPGTFV AAAEDGGIVG
ALDDMVLTQA CAEVAVAYPA SALRLHVNVS ASRIADTTLL DSVAQALAAS RFDPGRLVVE
ITETSRIDDL RGAREVLNEV RALGVAVALD DVGAGHSTLA ALHQLPVDVV KLDRTLLEPP
PRDGHRVATM RRSMISLAHA LGAVVVAEGI EREGQIAELE ELGCELGQGY FFARPGPLAS
LTIRRWVPPT IPGGTDSPDS AEVPDSPPDP PESSATSGE
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