| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3548 |
|---|
| Symbol | hisS |
|---|
| ID | 3904487 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 4242295 |
|---|
| End bp | 4243617 |
|---|
| Gene Length | 1323 bp |
|---|
| Protein Length | 440 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637880869 |
|---|
| Product | histidyl-tRNA synthetase |
|---|
| Protein accession | YP_482629 |
|---|
| Protein GI | 86742229 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0124] Histidyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00442] histidyl-tRNA synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.458882 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.233684 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGACG CGCCGATCGT CCGTCCCCTG CCCGTGAGCG GATTTCCCGA GTGGCTGCCC
GAGGTCCGTC TCGTCGAGCA GCGCTGGCTC GACACCATCC GAGCGACGTT CGAGCGGTAC
GGCTTCTGCT CGGTGGAGAC CCCCTCGGTC GAGGCGCTCG AGGTGCTGAC CGCGAAGGGG
GAGACCTCCC AGGAGGTCTA CATGCTACGC CGCCTGCAGG CCGACGCCGA CGACGACAGC
GCCCGCCTCG GCCTGCACTT CGACCTCACA GTGCCTTTCG CGCGGTACGT GGCCGCCCAC
TTCAACGACC TCGTGTTCCC GTTCAAGCGC TACCAGATCC AGCGGGTGTG GCGGGGGGAG
CGTCCTCAGG AGGGCCGCTT CCGCGAGTTC ACCCAGTGCG ACATCGACGT GATCAACGTT
GATCAGGTGC CCCTGCACTT CGACGCGGAA CTTCCCCGCA TCGTGCACGA GGTCCTGGGC
ACCCTCGGCG TTCCGCCCTG GACCCTCAAC ATCAACAATC GCAAGGTGCT CCAGGGCTTC
TACGAGGGTC TGGGCATCGG CGATCCGCTG GCCGTCATCC GGGTCGCCGA CAAGCTCGAC
AAGATCGGCC TCGCGGGGGT GGAGGGGCTG CTGACCACCG CGGTCGGGCT CGACCCGGAC
CAGGTGCGCG CCTGCCTGGA GCTCACGGGC ATTCGGGGCT GCGATCCCGG CGTCGTCGAG
GAGGTACGCC GGCTCGGGGT GAAATCGGAC CTGCTCTCCG AGGGGCTCGA CGAGCTCGCC
GCGGTTCTCG GCGATCTCGC CGACCTGCCC GCCGGCGACG TGGTCGCGGA CCTCTCGATC
GCCCGCGGTC TCGACTACTA CACCGGGACC GTCTACGAGG CGAAGTTCGT CGACTGGCCG
GACTTCGGCA GCATCTGCTC GGGGGGGCGG TACGACAACC TTGCCGGCTC CTTCATCCGC
CGCAACCTCC CCGGCGTCGG GATCTCGATC GGCCTCACCC GCATCTTCGC CAAGCTCCTG
GCCGAGGGCC TGCTCACCAC CGGGCCGTCC AGCCCCGCCG ACGTGCTGGT CGTGATCCCC
GCCGCGCCGC GCCGCGCCGC CGCCCTCGCG ACGGCCGCCG AGCTGCGCAC CCGGGGGCTG
CGGGTGGAGA CCTACCACCA GCCGGACAAG GTGGCCAGGC AGGTCCGCTA CGCCTCCCGC
AAGGGCATCG GATTCGTCTG GTTCCCGCCC TTCGACGATG GCCGGGCGCA CGAGGTGAAG
AACATGGCCA CCGGGGACCA GTCCGCGGCG GACCCGGCGA CCTGGACCCC GTCCGCGGGC
TGA
|
|---|
| Protein sequence | MSDAPIVRPL PVSGFPEWLP EVRLVEQRWL DTIRATFERY GFCSVETPSV EALEVLTAKG
ETSQEVYMLR RLQADADDDS ARLGLHFDLT VPFARYVAAH FNDLVFPFKR YQIQRVWRGE
RPQEGRFREF TQCDIDVINV DQVPLHFDAE LPRIVHEVLG TLGVPPWTLN INNRKVLQGF
YEGLGIGDPL AVIRVADKLD KIGLAGVEGL LTTAVGLDPD QVRACLELTG IRGCDPGVVE
EVRRLGVKSD LLSEGLDELA AVLGDLADLP AGDVVADLSI ARGLDYYTGT VYEAKFVDWP
DFGSICSGGR YDNLAGSFIR RNLPGVGISI GLTRIFAKLL AEGLLTTGPS SPADVLVVIP
AAPRRAAALA TAAELRTRGL RVETYHQPDK VARQVRYASR KGIGFVWFPP FDDGRAHEVK
NMATGDQSAA DPATWTPSAG
|
|---|
| |