| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3521 |
|---|
| Symbol | |
|---|
| ID | 3904460 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 4205948 |
|---|
| End bp | 4206517 |
|---|
| Gene Length | 570 bp |
|---|
| Protein Length | 189 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637880843 |
|---|
| Product | amino acid ABC transporter permease |
|---|
| Protein accession | YP_482603 |
|---|
| Protein GI | 86742203 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0521838 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.219342 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCTGCGC TGATCCTCGG TACCGTCCTC GCGGCGATGC GGGTCTCCCC CGTGCCCCCG
CTGCGCTGGA CCGGCACCGC CTACGTGCAG ACGGTCCGCA ACACCCCGCT GACCGTCGTG
TTCTTCTTCG TGGTGTTCGT CCTGCCACAG CTGGACATCG TCTTCTCGTA TTTCACGTTC
GCGGTGGTCG CGCTCTCGAT CTATCACGCC GCGCTGGTCT GCGAGGCGGT GCGTTCCGGG
ATCAATGGGG TCGACCTCGG TCAGGCCGAA GCGGCTCGTG CGCTGGGCCT GACCTTCTCC
CAGACACTAC GAATGATCAT TCTTCCGCAG GCGTTCCGCA ACGTGCTGCA ACCGCTGGGC
AGCGTGGTGA GCGCACTGAT CCGCAACACC TCGATCGCCG CGGCGTTCGG CGTCCAAGAG
CTGACCGGCA TGGTCCAACG GCTCACGACC GCCAATCCGG ACGCGGTGAT CGCCGTGCTG
CTCGGCGGCG TGGTGGCATA CTTGATCCTC ACCGTGGTGC TGGCAGCCGG GCTGTCCCTG
GCCGAACGAC GGGTGGCGAG GGCGCAATGA
|
|---|
| Protein sequence | MAALILGTVL AAMRVSPVPP LRWTGTAYVQ TVRNTPLTVV FFFVVFVLPQ LDIVFSYFTF
AVVALSIYHA ALVCEAVRSG INGVDLGQAE AARALGLTFS QTLRMIILPQ AFRNVLQPLG
SVVSALIRNT SIAAAFGVQE LTGMVQRLTT ANPDAVIAVL LGGVVAYLIL TVVLAAGLSL
AERRVARAQ
|
|---|
| |