Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Francci3_3518 |
Symbol | |
ID | 3905252 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. CcI3 |
Kingdom | Bacteria |
Replicon accession | NC_007777 |
Strand | - |
Start bp | 4201727 |
End bp | 4203349 |
Gene Length | 1623 bp |
Protein Length | 540 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 637880840 |
Product | (dimethylallyl)adenosine tRNA methylthiotransferase |
Protein accession | YP_482600 |
Protein GI | 86742200 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0621] 2-methylthioadenine synthetase |
TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family [TIGR01574] tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.964961 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.270769 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAACGGCC GCAGCTACGA GGTCCGCACG TTCGGGTGCC AGATGAACGT CCACGACTCC GAACGGCTCT GTGGGCTGCT GGAATCCGCC GGCTACTCCC CGGTCGATCC CGGCGGCGAG GCGGATGTGG TCGTGTTCAA CACCTGCGCG GTGCGGGAGA ACGCCGACAA CCGCCTGTAC GGCAACCTCG GCCAGCTAGT CCCGGTGAAG AAGGGCCATC CGGGCATGCA GATCGCGGTC GGGGGCTGCC TCGCCCAGAA GGACCGGGCC GCGATCCTCG ACCGGGCGCC CTGGGTTGAC GTGGTCTTCG GCACGCACAA CCTGCACCGA CTGCCCGTGC TGCTGGAGCG CGCGCGGCAC AACGCGGCGG CCCAGGTCGA GATCGCCGAG GCCCTGGAGG TCTTCCCGAG CTCCCTGCCG ACCCGGCGGG CCAGCCATCA CTCGGCCTGG GTCAGCATCA GCGTGGGATG TGACAACACC TGCACCTTCT GCATCGTCCC CAGCCTGCGT GGCCGCGAGC GTGACCGCCG GCCGGGCGAC GTGCTCGCCG AGGTCGAGGC CCTGGTCGCG GAGGGCGCCC TGGAGATCAC ACTGCTGGGA CAGAACGTCA ACTCCTACGG GCGCTCGCTG GGCGATCCCG GTGCCTTCGC GAAGCTGCTG GCCGCCTGCG GTCGCGTCGA CGGTCTCGAA CGTGTCCGAT TCACCTCACC GCATCCGCGC GACTTCACCG ACGACGTCAT CGAGGCCATG GCGACCACCT CGAACGTGTG CCACCAGCTG CACATGCCGT TGCAGTCCGG GTCGGACACC GTGCTGCGCC GCATGCGCCG CTCGTACCGT CGGGACCGTT TCCTCGGCAT TGTCGAGCGG GTGCGGGCGG CCATGCCCGA CGCGGCCATC ACCACCGACA TCATCGTCGG CTTCCCTGGC GAGACCGAGG CGGACTTCGC CGATACCCTC GACGTGGTGC GGGCGGCCCG GTTCTCCGGC GCCTTCACCT TCCAGTACTC GCCTCGCCCG GGCACCCCGG CAGCGACCAT GGACGCCCAG GTGGACCGGG CGACCGTGGC CGACCGGTAT ACCCGGCTGG TGGCCCTGCA GGACGAGATC TCCTGGGCGG AGAACCGGGC CCTGGTCGGC CGGCGGGTCG AGGTGCTGGT CTCGGAGGGG GAGGGGCGCA AGGACGGCGC CACCGGCCGG ATGTCCGGCC GGGCTCGGGA CGGACGGCTC GTGCACTTCC GCGCGGACGA GGCCGCGAGC TCGTCCACCG GCTCGGGCCC GAGGGCGGGC GGCGCCGCGC CCGCGGTCGC GGTGGCGGTC GCGCCTACGG TGCGCCCGGG CGACGTCGTC GAGACGGTGG TGACGCGGGC AGCACCCCAT CACCTCACCG CCGACGGCCC CCTGCGGTCC CACCGGGCGA CCCGTGCGGG GGACGCGTGG GCGCTCGGGC GTGACGGTGA CGGTGGCGGT GCGGCAGCCG CGCAGCAGCC GGCAGACGGA CGGCCGATCG TCACCCTGGG CATCCCGTCC CTGCGGCCGT CCTCGCCCGA TCCCGTCGGC CCGGCGTCGG CCGACGCGGC GTCGGCCGGC GCGGACGCCT GCTGTACTCC GGTACGTCGA TGA
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Protein sequence | MNGRSYEVRT FGCQMNVHDS ERLCGLLESA GYSPVDPGGE ADVVVFNTCA VRENADNRLY GNLGQLVPVK KGHPGMQIAV GGCLAQKDRA AILDRAPWVD VVFGTHNLHR LPVLLERARH NAAAQVEIAE ALEVFPSSLP TRRASHHSAW VSISVGCDNT CTFCIVPSLR GRERDRRPGD VLAEVEALVA EGALEITLLG QNVNSYGRSL GDPGAFAKLL AACGRVDGLE RVRFTSPHPR DFTDDVIEAM ATTSNVCHQL HMPLQSGSDT VLRRMRRSYR RDRFLGIVER VRAAMPDAAI TTDIIVGFPG ETEADFADTL DVVRAARFSG AFTFQYSPRP GTPAATMDAQ VDRATVADRY TRLVALQDEI SWAENRALVG RRVEVLVSEG EGRKDGATGR MSGRARDGRL VHFRADEAAS SSTGSGPRAG GAAPAVAVAV APTVRPGDVV ETVVTRAAPH HLTADGPLRS HRATRAGDAW ALGRDGDGGG AAAAQQPADG RPIVTLGIPS LRPSSPDPVG PASADAASAG ADACCTPVRR
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