| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3505 |
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| Symbol | |
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| ID | 3905239 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | - |
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| Start bp | 4185210 |
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| End bp | 4186478 |
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| Gene Length | 1269 bp |
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| Protein Length | 422 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637880827 |
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| Product | sigma 38 |
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| Protein accession | YP_482587 |
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| Protein GI | 86742187 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.176443 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCTGC CTGCTCTGGA ACTTGCCGAG CGCACCGACG ACAACCGCCC GCGTAGCCCG
CGGCGTGCTC GTCGGGCCGC TCCTCCTGTC CGCACCGCTC CCAGCCGTTC GCTGGCCGCT
GTTCCCGACG ATACCGACGA GCTCGATGTG AGCGCGGTGG CCGAGGTCAT CGCCCGTGGT
CGCGAGGCCG GCGAGATCAG CCGCTCCGAG TTGCGTGATG TGCTCGAGTC CGCGGACATC
GGTATTGAAC TGTTGCCCGC TCTCATCGCG CGCCTCAACG CCGTTGGCAT CGAACTCCTC
GACGAGGAGG AAGCGAGCGA CGACGCCACC GCCGCCAGCC GGTCCACCGC CGAACACGCG
GGTACCGCCG ACCTCGTGCG CATGTACCTG CGCGAGATCG GCAAGGTGCC GCTGCTCAAC
GCCGCCCAGG AGGTCGAACT CTCCAAGCGG GTCGAGGCGG GCCTGTTCGC TGAGTACAAG
CTCGAGAGCG TCCCCGACCT GCCCGCCGAC CTTCGTCGTG ATCTCGGTCT GCTGGTCAAG
GACGGCCATG CCGCCAAGCA GCAGCTCGTC TCGGCGAACC TGCGGCTGGT GGTCTCCGTC
GCCAAGAAGT ACAGCGGTCG CGGGATGACC CTGCTGGATC TGGTCCAGGA GGGCAACCTC
GGTCTTATCC GCGCGGTGGA GAAGTTCGAC TACGCCAAGG GCTACAAGTT CTCGACCTAT
GCGACCTGGT GGATCCGCCA GGCCATCGGC CGGGCGCTCG CCGATCAGGC GCGGACGATC
CGCATCCCGG TCCACGTGGT CGAGCAGATT AACAAGATCA CCCGGTTGCA GCGCCAGCTT
GTCTCCACGC TCGGCCGTGA GCCGACCGAC GAGGAGCTCG CCCTCGAGCT GGACATGCCG
ATCGAGCAGG TGGTGGAGCT GCGCCGGTAT GCGCAGGACA CCGTCAGCCT GGAGACCTCG
GTCGGTGACG ATGGTGACTC CGTGCTCGGT GACTTCATCG AGGACTCCGA CGCGACCTCC
CCGGCGGACG CCGCCTCCTA CGGCGCCATG CAGGACGAGA TCGAGAACGT CCTCGGTGGC
CTGAGCCCGC GGGAGCGCGA GGTGATGCGG CTGCGCTTCG GTCTCGCCGA CGGCAAGCAG
CACACCCTCG CCGAGGTGGG CAACCGGCTC GGCCTGACCC GTGAGCGCAT CCGTCAGATC
GAGCGGGACA CGCTTCGGGA GTTGCGCAAG CCCGCCGTCG CCGGTCGGCT GCGCGAGTTC
CTCGACTGA
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| Protein sequence | MTLPALELAE RTDDNRPRSP RRARRAAPPV RTAPSRSLAA VPDDTDELDV SAVAEVIARG
REAGEISRSE LRDVLESADI GIELLPALIA RLNAVGIELL DEEEASDDAT AASRSTAEHA
GTADLVRMYL REIGKVPLLN AAQEVELSKR VEAGLFAEYK LESVPDLPAD LRRDLGLLVK
DGHAAKQQLV SANLRLVVSV AKKYSGRGMT LLDLVQEGNL GLIRAVEKFD YAKGYKFSTY
ATWWIRQAIG RALADQARTI RIPVHVVEQI NKITRLQRQL VSTLGREPTD EELALELDMP
IEQVVELRRY AQDTVSLETS VGDDGDSVLG DFIEDSDATS PADAASYGAM QDEIENVLGG
LSPREREVMR LRFGLADGKQ HTLAEVGNRL GLTRERIRQI ERDTLRELRK PAVAGRLREF
LD
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