| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3503 |
|---|
| Symbol | |
|---|
| ID | 3905237 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 4181496 |
|---|
| End bp | 4182776 |
|---|
| Gene Length | 1281 bp |
|---|
| Protein Length | 426 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 637880825 |
|---|
| Product | histone deacetylase superfamily protein |
|---|
| Protein accession | YP_482585 |
|---|
| Protein GI | 86742185 |
|---|
| COG category | [B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.678052 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.280253 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGTGTCC CGGGCGATTC CGAGCGGCGG ACCGACGGCC GTCCGCAGGT CGAGCCGCAG
GTCGAGCCGA CGGTCGTGGC CTGGGATCCG GTCATGGCCG GCTACGACTT CGGGCCGACG
CATCCGCTGC ATCCCGTGCG GCTCGAGCTC ACCATGGACC TCGCCATGAG TCTCGGTGTT
CTCGACGCGC CGGGCATCCG GATCTCCAGG CCGACCCTCG CCTCCGACGA CCTCATCGGC
CTGATCCACG ATCCGGTCTA CCTGAGCGCG GTCCGCGCCG CGCCCGACCC GGCGCAGGCC
AGGTTCGCGG CCCTGTTCGG CCTGGGCACG GCCGACAACC CCATCTTCGA ACGGATGCAC
GAGGCCGCCG CACTCATCAC CGGTGGCACG ATCGAGGCGG CACGGGCGGT GTGGAGCGGG
CCGCCGCGGC ACGCCGTGTC GATCGCCGGC GGGCTGCATC ACGCGATGCC GGGAATGGCG
AGCGGATTCT GCATCTACAA CGACCCGGCG ATCGCGATCG CCTGGTTGCT CTCCGCCGGA
GCCGCCAGAG TGGCGTACGT CGACGTGGAC GTGCATCACG GCGACGGCGT GCAGACGGCG
TTCTACGACG ATCCGCGGGT GCTCACCATC TCCCTACACC AGACGGGGAG TACCCTCTTC
CCGGGCACCG GATTCCCGAC CGAGGTGGGT GCTCCCGCCG CGGAGGGCAC CGCGGTGAAC
GTGGCGTTGC CCCCCGCCAC CGGCGATGCC GGCTGGCTGC GCGCCTTCTC CGGGGTGGTG
CCGGTGCTCC TGCGGTCCTT CCGGCCGCAG GTGCTGGTGA CCCAGCACGG CTGCGACACG
CACGCCTTCG ACCCGCTGGC CGATCTGGCG CTGTCGGTGG ACGGCCAACG GGCCTCCTAC
GACCTGCTGC ACGCGCTGGC CCACGAGGTC TGCGACGGAC GCTGGCTGGC CTGCGGCGGT
GGCGGGTACG CGCTGGACAC GGTCGTGCCG CGGGCCTGGA CGCAGCTGCT GGCGATCGCC
GGCCACGTGC CCCTGGATGC CGGCCGCGCC CTGCCGGAGG ACTGGCGCTC CGCGGCGCCG
GGACGGGTGC GGGCGGCGAC CGGGCAGAAG TCCGTCGGAG CCGCCGCCAT GCCCCGGACG
CTCGGGGACG GGGTGAGTGT CCGGTATCGT CCCTGGGACG CGGGAGAGGG AGACCCCGAC
GATCCGTTGG ACCGGACGGT GGCGGCGACC CGGCGTCAGG TGCTGCCGTT GCACGGCCTC
GACCCCACCG TCGACCGCTG A
|
|---|
| Protein sequence | MGVPGDSERR TDGRPQVEPQ VEPTVVAWDP VMAGYDFGPT HPLHPVRLEL TMDLAMSLGV
LDAPGIRISR PTLASDDLIG LIHDPVYLSA VRAAPDPAQA RFAALFGLGT ADNPIFERMH
EAAALITGGT IEAARAVWSG PPRHAVSIAG GLHHAMPGMA SGFCIYNDPA IAIAWLLSAG
AARVAYVDVD VHHGDGVQTA FYDDPRVLTI SLHQTGSTLF PGTGFPTEVG APAAEGTAVN
VALPPATGDA GWLRAFSGVV PVLLRSFRPQ VLVTQHGCDT HAFDPLADLA LSVDGQRASY
DLLHALAHEV CDGRWLACGG GGYALDTVVP RAWTQLLAIA GHVPLDAGRA LPEDWRSAAP
GRVRAATGQK SVGAAAMPRT LGDGVSVRYR PWDAGEGDPD DPLDRTVAAT RRQVLPLHGL
DPTVDR
|
|---|
| |