| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3501 |
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| Symbol | |
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| ID | 3905235 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | - |
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| Start bp | 4174895 |
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| End bp | 4178572 |
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| Gene Length | 3678 bp |
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| Protein Length | 1225 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 637880823 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_482583 |
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| Protein GI | 86742183 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.480314 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.404449 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGCCCCC CGGGATCCGC CTCCCCGTCA TCGGGCGTTG TTCCGTCCGG CCAGGGGGAT
GTCTCCCCGG GACCGAATCC GGTCACCCGA TCCCAAGGGG GACCGTCGGC TGGCCCACAC
ACCAACCCCG CCCCACACAC CAACCCCGCC CCACGCGCGC ATCCCGGCCC GAACCAGGTC
CCCGGCCCGA AGCACGCTCC CGGCCCGGAG ACCGGCCCCG GTCAAGACCG GGGAGCCGAC
CCCGAGCTAC CCGGACTACC CGAGGGCTGG CCCATGGTCG CCCGGCCGGC CGCTTCGGCC
GTGACCGCCG AGCCGGTCAC GCGGGACGTC ATCGACGGCA CCGAGCCGCG CCGCGCGCCG
GAGGCGCCAG GGATGCGCCG GTCCGATCCG GCGGGGCTGC CGGGGCGTGT CCGGTCCGCT
TTCCCCCTGC CCGGACACGC CCCGGGAACC GACCCCGCGG CCACGTTCGT GATGCTGGAC
GCGCTGTTCG CGTGGGCCCC GGTCGGTCTC GCCCTGCTCG ACCGGGCCGG GCGGTTCCTG
CGGGTCAACG ACACACTTGC CCGGTTCGAC CGCCGGCCGG TCCACGAGCA CCTCGGCCGT
ACCGTCTCCG AGCTCCTCGG CGACACCGGC CAGGAACTCG ACGCTCTGCT GGCACGGGTA
CTGCGCACCG GCGAGCCGGT GGTGGACTTG GAGGTCATGG TCGCCACCGA TGGTTCCGGG
CCGCCGCAGA CGTGGCTCGC CAGCTGGTAT CCGGTGAACG ACCCTCAGGT CGGGCTGGTG
GGCGTGGCGT TCGTCGCGAT CGACGCCAGC GGGACGCGGG CGGTCGAGGG GGAGCGGGCG
CGGGCCGACG CACGTTACCT CGGCCTCGTG GACGCCGCCG CGGTGGACGT GTTCCACGCC
GAAGGCGACG GGGCACTCGA TGCCGATCTG CCCCGCCTGC GGGCCTTCAC CGGGCGGCAT
CCGGCGGAGC TGGCCGGGTT CGGCTGGCTC GGCGTGGTCC ACCCCGACGA CCGGGAGCGG
GTCGGGCGCG CCTGGCACGG GGCGATCGAG CACGGTGAGA CCTTCGAGGC CGAGTTCCGG
ATCTCCGGTG GCGGAGGCGA CCGCACCGCC ATGCGGGTGG TCGAGGCCCG CATCGTTCCC
ATGCCGGCGG CCGGCCGGCC GAACAGCCGG CCCAGCGAGT GGCTCGGGGT GATCCGCGAC
CTCACCGAGG TACGCGCCGC CGAGGCCGAC CGGGCCACGG CCGACCAGCG GGCCCGGATC
GCGACGGAAC GGGCCGAACA GACCGCGACG TTGGCCGTGG CGCTCGCCCG GACCCTGACC
GTGGACGACG TCGTCGCCAC CGTCCTCGAC GTCGGGGGGC GGATGGCCGG GGCCGCCGGC
CGGGGCGTCG CGCTCGTGGA CGAGGCGCAC GACCGGCTGC TCTTCCACGC CCCGCCGGGT
CCCGCCGACG GCCTCGCCCG CTGGTCGGAG GTGGCGCTGG GGGCGGTACA TCCGGTGGCG
GAGGTCATGC GGGGCGGTCG TGCGCTGTTT CTCGTCGACC GCGACGAGCT GCTCGCCCGC
TGGCCGGTGC CGGAGGTCGC CGACGTCGCC GCCGCGGCGG GTGAGCATGC CTGGGCGATG
CTGCCGCTGG CCGTCGGGGG CGGCGCCCCC TTCGGCGTGG TGACCTTCGG GTTCCGCCAG
GCGCGGGAGT TCACCGCCGC TGATCAGGCG TCCCTCATCG CGATCGCCGA CGCCTGCGCG
CAGGCCCTGG AACGGGCCAC CGGCTACGAA CAGCTCGCCG CCGACGCCGC GCGCGGTCAT
CGGACCCTGG CTGCGACGCG CGAGGCGCAG GCCGCCCTGG CACTCGCCGA TCGACGCCTT
CAGCTGCTGG GGCGAGCTAC CGGGATCGTG GCCGCGGCCG TGGAGCCTCC CGTCGCCCTG
CGCTCCCTGG CCGAGTTGAT CGTCTCGGAG GTCGCCGACC TGTGTGTTGT CCAGCTCGTC
ACTGGCACAC CCGCTCCCGT CCCGGCGTCC TGGAGCGCTG CCGCGGTGTC CGTCCGGGCC
GGGGACGCGG CCGGGGATAA GGCCGGGGAC GCGGCCGGGG ATAAGGCCGG GGCCGAGGAG
ACGGCGGGGG ACCGGGCGGC AGAGCCGGTG CCCGAGCTGC GTCCACTCGT CGTCCTGGCC
CGTGACGGGC TTGGCACGGT GCCTCCGTTC GCCTCGGGGG CCGGCGCGGC GACGTCGCCG
GCGAGTCCGT TCGCCCGGGC CGCCCGCCGG GGCGAACGGC TGATCGTCGC ACTGACAGCG
GGCGAGTGGG ATCCGCCGGC CGACGCCGAG CGGTGGATCC GCCAGGTGGG GGCCCACACG
ATGGCTGTCG TACCCGTGGT ACGGGTCGGC CACGTCGTCG CCGTACTGAG TGTGACCGCC
GTTGCGGATC GACCTCCGTT CACCGAAGCG GATCTGCTCT TGCTGACCGA ACTCGCCGCC
CGGGTGGGGG TCGTCCTGGA CCGGATCGAT CGGGGGGCCG CCGAGCGCAG CAATGCGCTG
GCACTGCGCG AGGCGTTGCG CGGTTCTCCA CCCGCCGTCC CGTCCGGGCT CGAGGTGGCC
ACCCGTTACC TGCCCGGCGG GGTCGATGAC GACGCCGGTA GCGACTGGTT CGACGTGATT
GACCTGGGAG CCGGGCGAGT CGCCCTGATG ATCGGCAACG TGATGGGCCG AGGGATCCGG
GCGACCGCGG TGATGGGGCA GCTGCGCGCG GCGGCCCGCA CCTGCGCCCG TCTCGATCTT
CCCCCGGCCG AGGTGCTGAC GCTGCTGGAC GGCATCGTCG CGGACCTGCC CGGGGAGGAG
ATCGCCACCT GCATCTACGC GGTCGTTGAG ATCGACAGTG GGGTGCTGAC GCTGGCGAGT
GCCGGGCACC CGCCGCCCCT GGTCGTCGCG CCGGACGGGT TGGTCTCCAG GCTCTACATG
GCGGTGGGAT CTCCACTCGG GGTGGCCCGG TCGGACGTGA CCGAGTACAC GGTGCGACTG
GGACGGGGAT ATCTGATCGC CCTGTTCACC GACGGGCTCG TCCGGGGACG TGCGCGCGAC
CTCGACGCCG GGGTCTCGCA GCTCGCGGCC GCGCTCGCCC GCGCCAGCGA CAGGTTCACC
GCGAATCTGG ACGACCTGGT CACCACGGCG TGTGCCGGTC TCGGTCCCGC CGTCGCCCCC
GGCCCAGTGG GTTCCGGGGC GGCCGACGGG GCGGCCGACG AGGTGGCGGC CGATGACGTC
GCGCTTCTGT TCGCCCGGTT GCCCGTTGAA CCGACGGCCG CGGCGGCCCT CCTGGACGTC
ACCTTCGACG GTGCGGCGAG CCTGCGCGCC GTGCGGGCTC AGGCCAGGCT CGCGCTGGAG
AACGCGCCGC TGGCCTCGGA AGTCGTCGAC ACCATCGTTC TGGTGCTGTC GGAGCTGGCG
AGCAACGCGG TGCGGCACGG TCGCCCACCA CTGTCGGTGC GGCTGCGGCT GCTGGGCGAC
CGGGCCGTCG TCGAGGTCGC CGACGGTGGC GGCCGGGTGC TGCGGCGGCG CCACGCCGCG
GCCGAGGATG AGGCCGGCCG CGGGCTCGGC CTGGTCTCCC AGCTCGCCGT TCGGCATGGC
GTCCGTCCGG TCCCCGACGG GAAGGCCGTG TGGGCCGAGA TCGACCTGAC CGGGACGACC
CCGCCCGAAC CGGACTGA
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| Protein sequence | MSPPGSASPS SGVVPSGQGD VSPGPNPVTR SQGGPSAGPH TNPAPHTNPA PRAHPGPNQV
PGPKHAPGPE TGPGQDRGAD PELPGLPEGW PMVARPAASA VTAEPVTRDV IDGTEPRRAP
EAPGMRRSDP AGLPGRVRSA FPLPGHAPGT DPAATFVMLD ALFAWAPVGL ALLDRAGRFL
RVNDTLARFD RRPVHEHLGR TVSELLGDTG QELDALLARV LRTGEPVVDL EVMVATDGSG
PPQTWLASWY PVNDPQVGLV GVAFVAIDAS GTRAVEGERA RADARYLGLV DAAAVDVFHA
EGDGALDADL PRLRAFTGRH PAELAGFGWL GVVHPDDRER VGRAWHGAIE HGETFEAEFR
ISGGGGDRTA MRVVEARIVP MPAAGRPNSR PSEWLGVIRD LTEVRAAEAD RATADQRARI
ATERAEQTAT LAVALARTLT VDDVVATVLD VGGRMAGAAG RGVALVDEAH DRLLFHAPPG
PADGLARWSE VALGAVHPVA EVMRGGRALF LVDRDELLAR WPVPEVADVA AAAGEHAWAM
LPLAVGGGAP FGVVTFGFRQ AREFTAADQA SLIAIADACA QALERATGYE QLAADAARGH
RTLAATREAQ AALALADRRL QLLGRATGIV AAAVEPPVAL RSLAELIVSE VADLCVVQLV
TGTPAPVPAS WSAAAVSVRA GDAAGDKAGD AAGDKAGAEE TAGDRAAEPV PELRPLVVLA
RDGLGTVPPF ASGAGAATSP ASPFARAARR GERLIVALTA GEWDPPADAE RWIRQVGAHT
MAVVPVVRVG HVVAVLSVTA VADRPPFTEA DLLLLTELAA RVGVVLDRID RGAAERSNAL
ALREALRGSP PAVPSGLEVA TRYLPGGVDD DAGSDWFDVI DLGAGRVALM IGNVMGRGIR
ATAVMGQLRA AARTCARLDL PPAEVLTLLD GIVADLPGEE IATCIYAVVE IDSGVLTLAS
AGHPPPLVVA PDGLVSRLYM AVGSPLGVAR SDVTEYTVRL GRGYLIALFT DGLVRGRARD
LDAGVSQLAA ALARASDRFT ANLDDLVTTA CAGLGPAVAP GPVGSGAADG AADEVAADDV
ALLFARLPVE PTAAAALLDV TFDGAASLRA VRAQARLALE NAPLASEVVD TIVLVLSELA
SNAVRHGRPP LSVRLRLLGD RAVVEVADGG GRVLRRRHAA AEDEAGRGLG LVSQLAVRHG
VRPVPDGKAV WAEIDLTGTT PPEPD
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