Gene Francci3_3478 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFrancci3_3478 
Symbol 
ID3905212 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. CcI3 
KingdomBacteria 
Replicon accessionNC_007777 
Strand
Start bp4147221 
End bp4147748 
Gene Length528 bp 
Protein Length175 aa 
Translation table11 
GC content70% 
IMG OID637880800 
Productlytic transglycosylase 
Protein accessionYP_482560 
Protein GI86742160 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.61144 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCAATG GGGTGCCCGC ACGTTCTACC CTGGCCGCGT TCATCGTCAT CACCCTGATG 
AGCGGCTGCG GCGTACTGCG GTACCCCCAC GTCGACGTGC CCGACGACCT GGTCCCGGTC
TTCCGGTCCG CGGCGGCGAC CTACGGTGTC CTGACCGCCG CGCAGCTCGC GGCGCAGGCC
CGGGTGGAGA GCAAGTTCGA CGCGCAGGCG GTCTCGCGCG CCGGCGCCCG GGGCATCATG
CAGTTCCTCC CCACCACCTG GGCCGAGTTC GGGATCGACG GTAACCACGA CGGGATCACC
GACCCACTCG ACCCGCTCGA CGCCATCCCG TCCGCGGCCT TCTACGAGGC CCGGCTCGCC
CAGGAGGTCG GGTATCTACC CGGTGACCGG GTCTCGCTGA TCCTCGCCGC TTACAACGCC
GGCCCGGCCG CCGTGCGAAC CGCCGGGGGC ATCCCCGACT TCCAGGAGAC CAGGGCCTAC
GTGACAAAGG TCCACGACTG GGCGGCCACC TACTCCGACC GGCTCTGA
 
Protein sequence
MINGVPARST LAAFIVITLM SGCGVLRYPH VDVPDDLVPV FRSAAATYGV LTAAQLAAQA 
RVESKFDAQA VSRAGARGIM QFLPTTWAEF GIDGNHDGIT DPLDPLDAIP SAAFYEARLA
QEVGYLPGDR VSLILAAYNA GPAAVRTAGG IPDFQETRAY VTKVHDWAAT YSDRL