Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Francci3_3478 |
Symbol | |
ID | 3905212 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. CcI3 |
Kingdom | Bacteria |
Replicon accession | NC_007777 |
Strand | + |
Start bp | 4147221 |
End bp | 4147748 |
Gene Length | 528 bp |
Protein Length | 175 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 637880800 |
Product | lytic transglycosylase |
Protein accession | YP_482560 |
Protein GI | 86742160 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.61144 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCAATG GGGTGCCCGC ACGTTCTACC CTGGCCGCGT TCATCGTCAT CACCCTGATG AGCGGCTGCG GCGTACTGCG GTACCCCCAC GTCGACGTGC CCGACGACCT GGTCCCGGTC TTCCGGTCCG CGGCGGCGAC CTACGGTGTC CTGACCGCCG CGCAGCTCGC GGCGCAGGCC CGGGTGGAGA GCAAGTTCGA CGCGCAGGCG GTCTCGCGCG CCGGCGCCCG GGGCATCATG CAGTTCCTCC CCACCACCTG GGCCGAGTTC GGGATCGACG GTAACCACGA CGGGATCACC GACCCACTCG ACCCGCTCGA CGCCATCCCG TCCGCGGCCT TCTACGAGGC CCGGCTCGCC CAGGAGGTCG GGTATCTACC CGGTGACCGG GTCTCGCTGA TCCTCGCCGC TTACAACGCC GGCCCGGCCG CCGTGCGAAC CGCCGGGGGC ATCCCCGACT TCCAGGAGAC CAGGGCCTAC GTGACAAAGG TCCACGACTG GGCGGCCACC TACTCCGACC GGCTCTGA
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Protein sequence | MINGVPARST LAAFIVITLM SGCGVLRYPH VDVPDDLVPV FRSAAATYGV LTAAQLAAQA RVESKFDAQA VSRAGARGIM QFLPTTWAEF GIDGNHDGIT DPLDPLDAIP SAAFYEARLA QEVGYLPGDR VSLILAAYNA GPAAVRTAGG IPDFQETRAY VTKVHDWAAT YSDRL
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