| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3466 |
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| Symbol | sdhA |
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| ID | 3905200 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | + |
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| Start bp | 4131001 |
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| End bp | 4132938 |
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| Gene Length | 1938 bp |
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| Protein Length | 645 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637880789 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_482549 |
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| Protein GI | 86742149 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01811] succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGTTTT ACAACCTCGG TGCCGACATC GCCGACACCG CGGCGCCGGA CGTGCCGATC
GAGCAACGCT GGGACAAGCG ACGCTTCACC GCCAAGCTGG TCAACCCGGC CAACCGGCGC
CGCCACACCG TGATCGTCGT CGGCACGGGG CTCGCCGGTG GCGCCGCCGG CGCCACCCTC
GCCGAGCAGG GCTACCGGGT CATCCAGTTC TGCTACCAGG ACTCGCCGCG CCGGGCGCAC
TCCATCGCCG CGCAGGGCGG CATCAACGCG GCGAAGAACT ACCGCAACGA CGGCGACTCG
GTCCACCGGC TGTTCTACGA CACGGTGAAG GGTGGCGACT TCCGCTCCCG GGAGTCCAAC
GTCTACCGTC TCGCGCAGAC GTCCACCCAG ATCATCGACC AGTGCGTGGC GCAGGGTGTG
CCCTTCGCCC GGGAGTACGG CGGCCTGCTC GACACCCGCT CGTTCGGCGG CGTGCAGGTC
TCGCGGACCT TCTACGCCCG GGGCCAGACG GGTCAGCAGC TGCTGATCGG CGCCTACCAG
GCGCTGTCCC GGCAGATCGA TGCCGGCGGC GTGGAGATAC ACCCGCGCAC CGAGATGCTC
GACCTGATCG TCATCGACGG GCACGCCCGC GGCATCGTCG CCCGCGACCT GGTCACTGGC
CAGGTCTCCA CCTACCTCGC CGACGCCGTC GTGCTCGCCA CCGGCGGGTA CGGCAACGTG
TTCTACCTGT CGACGAACGC CAAGAACTCC AATGCCAGCG CGATCTGGCG GGCGCACCGG
CGCGGGGCGT ACTTCGCCAA CCCGTGCTAC ACCCAGATCC ACCCGACCTG CATCCCCCGC
TCCGGCGACT ACCAGGGCAA GCTCACGCTG ATGAGCGAGT CGCTGCGCAA CGACGGCCGC
ATCTGGGTGC CGAAGAAGGC GGGCGACACC CGCTCGCCCG ACACCATCCC GGAGAACGAG
CGCGACTACT ACCTCGAGCG GATCTACCCG GGATTCGGCA ACCTGGTCCC CCGTGACATC
GCGTCGCGGG CGGCGAAGTA CCAGTGCGAC GCCGGTCGCG GCGTGGGTCC GGGCGGGCTC
GGCGTCTACC TCGACTTCGC CGACGCCATC AAGCGGATGG GCGAGGACAA GGTCCGCGAG
AAGTACGGCA ACCTGTTCGA GATGTACGAG CGGATCACCG CCGAGGACCC CTACAAGGTG
CCGATGCGGA TCTACCCGGC CGTCCACTAC ACCATGGGTG GGCTGTGGGT GGGCTACGAT
CTACAGAGCA GTATTCCGGG GCTCTTCGTG ATCGGGGAGG CGAACTTCTC CGACCACGGC
GCCAACCGTC TCGGCGCGAG CGCGCTGATG CAGGGTCTCG CCGACGGCTA CTTCGTGCTG
CCGCCCATGC TGGGTGACTA CATCGCCTCG ACGAAGCTGG GCGCGGTCGA CGCGAGCCAT
CCCGCGGTCG CGGAGACGGC GGCCGAGGCG ACGGGCCGGC TGACCCGCCT GCTCGCCGTG
AACGGTGACC GCACCGTCGA CTCGTTCCAC CGTGAGCTCG GCGAGATCAT GTGGGACGAG
TGCGGGATGG CGCGCAGCGA GGACGGCCTG CGCAAGGCGC TGGGGCGCCT TCCGGAGCTG
CGCGAGGAGT TCTGGCGCCA GGTCAAGGTG CCGGGCGACG CGGGTAGTGT CAACCAGAGC
CTGGAGCGGG CGAACCGGGT GTCGGACTTC CTCGAACTCG GCGAGCTGAT GTGTGTCGAC
GCCCTGCACC GCGAGGAGTC CTGCGGAGGG CACTTCCGGG TCGAGAGCCA GACCCCGGAC
GGCGAGGCCC TTCGCGACGA CGACCGGTTC GCCTACGTCG GAGCCTGGGA GTTCGCCGGC
ACGGAAACCC CGCCGGTGCT GCACCGCGAG GTTCTGGAGT TCGAGCACGT CCACCTCGCC
CAGCGTAACT ACGCGTGA
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| Protein sequence | MSFYNLGADI ADTAAPDVPI EQRWDKRRFT AKLVNPANRR RHTVIVVGTG LAGGAAGATL
AEQGYRVIQF CYQDSPRRAH SIAAQGGINA AKNYRNDGDS VHRLFYDTVK GGDFRSRESN
VYRLAQTSTQ IIDQCVAQGV PFAREYGGLL DTRSFGGVQV SRTFYARGQT GQQLLIGAYQ
ALSRQIDAGG VEIHPRTEML DLIVIDGHAR GIVARDLVTG QVSTYLADAV VLATGGYGNV
FYLSTNAKNS NASAIWRAHR RGAYFANPCY TQIHPTCIPR SGDYQGKLTL MSESLRNDGR
IWVPKKAGDT RSPDTIPENE RDYYLERIYP GFGNLVPRDI ASRAAKYQCD AGRGVGPGGL
GVYLDFADAI KRMGEDKVRE KYGNLFEMYE RITAEDPYKV PMRIYPAVHY TMGGLWVGYD
LQSSIPGLFV IGEANFSDHG ANRLGASALM QGLADGYFVL PPMLGDYIAS TKLGAVDASH
PAVAETAAEA TGRLTRLLAV NGDRTVDSFH RELGEIMWDE CGMARSEDGL RKALGRLPEL
REEFWRQVKV PGDAGSVNQS LERANRVSDF LELGELMCVD ALHREESCGG HFRVESQTPD
GEALRDDDRF AYVGAWEFAG TETPPVLHRE VLEFEHVHLA QRNYA
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