| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3360 |
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| Symbol | |
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| ID | 3905942 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | + |
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| Start bp | 3988032 |
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| End bp | 3989669 |
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| Gene Length | 1638 bp |
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| Protein Length | 545 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 637880683 |
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| Product | glucose-methanol-choline oxidoreductase |
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| Protein accession | YP_482444 |
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| Protein GI | 86742044 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0587927 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTCCCAC CGGGCTACGG ACCGGCTCCC ACCCCGCAGG AGCTGGCGGA CGAGTACGAC
ATCTGCGTGG TGGGCAGCGG GGCGGCGGGT TCGGTCGTCG CCTGGCTGCT CGCCCGGGCC
GGGCTGTCGG TGGCCGTGGT GGAGCAGGGT GGGTTCGTCA CGGACGAGGA CAGCTACGAC
GACGTGCTGG CCGCGGGGGA GTCCGCCTGG GTGCGGCAGG AGAACGGCAC CTGGGCCAAG
GTGGGCTCAC CCTGGACGAC CTGCAACGTG GGTGGCGGCA CGCTGTTCTT CGGGGGGGTC
CTGTTCCGCC ACCGCCCGCT CGACTTCGAC CCGGAGACCG TTCTGGGCCG GGCCGACCTG
CCGCTGCGCT GGCCGCTTGA GCCGGCGGAG CTGACGGACT ACTACGACGC CGTCGAGGAT
CTGATCGGCG TCGCGGGTGT CGCGGACGGC GACCCCAGCC TGCCGGTCCG GTCCAGGCCG
TATCCGCTGC CCCCGGTGGC CACCACGGCG GAGGGGCGGC GGCTGACGGA GGCCGCGAGG
TCCATGGGCT GGGCACCGTT TCCCACCCCC CTGGGCGTCA ACAGCATCGA GTACCGCGGT
CGCCCGGTGT GCGCCGCGGA TGCCCCCTGC ATCTCACGGC GCTGCCCGAT CCACGCCAAG
GGGGACGCGC TGGACCGCTT CCTGCGGCCG GCGATGGCCG CGGGCGCACG CCTGTTCACC
GGGCTGAAGG CGGAGGCCCT GCTCGGGGAC GCGCGTCGCG ACGCCACCGC GTTGCGGTGC
GTCCGGATGC CGGACGGCGA GCGCGTCGTC CTGCGGGCCC GGCACTTCGT GCTGTGCGCG
AACGCCGTGC AGACTGCCGC GCTGCTGCTG CGTTCGACCA CCGTGCGGCA TCCGGCCGGG
CTGGGCAACT CACACGACAT GGTCGGCCGG GGGCTCTGCT TCAAGATCGG TGAATATCTG
GTCGGGTACT GCCACGAGCC GACCTCGGCG CCCGCCCGCA GCCGGCTGAT GGGCCTGGGA
CCCATCTCCA CCTGCTGCGT GACCGACCTC TACCAGGACC CGGCGGCGCC GGGCGGGCTG
GGTGGCCTGC TCTACGAGAA CCGGCCCGAG CGGACCTACC GGTTACGGGA CACCGAACAC
CTGCTGCGGA TCGAGGCGCT GGTACCGGAC GAACCCCAAC CGGGCAACCG GGTCCGGCTG
GGGCCGGGGA CCGACGCCCA CGGCGTGCCC GACGTCCTGA TGGACTACCA GGCCCATCCG
CGCGACCTCG CCCGCTCCGA GTACATGCTC GGGCAGGGCG AGGCGCTGCT GCGGGCCGCC
GGCTGCGACG TCATCGTGCG GGAGGCGTCC GGGTGGGCGC TCGGCAGCGG GCACCTGCAC
GGCACCTGCC GCATGGGTGA GGACCCGGCC ACCAGCGTGA CCGGGCCCGA CGGCCGCCTG
CACGACGCGG ACAACGTCTT CGTAGCCGAC GGCGGCCTGT TGCCGTTCCC CGGCGGGGTC
AATCCGACGC TGACCATCCA GGCGCTCGCG CTACGGGTGG CCCATCGGCT CCTCGCGGAG
CGCTACGCCA CCGGTCGCGT CCCGATCGGG GAACTGGTCG GGCCGAGCGT GACCGCGGCG
AACCGGTCGC CGAGGTAG
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| Protein sequence | MVPPGYGPAP TPQELADEYD ICVVGSGAAG SVVAWLLARA GLSVAVVEQG GFVTDEDSYD
DVLAAGESAW VRQENGTWAK VGSPWTTCNV GGGTLFFGGV LFRHRPLDFD PETVLGRADL
PLRWPLEPAE LTDYYDAVED LIGVAGVADG DPSLPVRSRP YPLPPVATTA EGRRLTEAAR
SMGWAPFPTP LGVNSIEYRG RPVCAADAPC ISRRCPIHAK GDALDRFLRP AMAAGARLFT
GLKAEALLGD ARRDATALRC VRMPDGERVV LRARHFVLCA NAVQTAALLL RSTTVRHPAG
LGNSHDMVGR GLCFKIGEYL VGYCHEPTSA PARSRLMGLG PISTCCVTDL YQDPAAPGGL
GGLLYENRPE RTYRLRDTEH LLRIEALVPD EPQPGNRVRL GPGTDAHGVP DVLMDYQAHP
RDLARSEYML GQGEALLRAA GCDVIVREAS GWALGSGHLH GTCRMGEDPA TSVTGPDGRL
HDADNVFVAD GGLLPFPGGV NPTLTIQALA LRVAHRLLAE RYATGRVPIG ELVGPSVTAA
NRSPR
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