| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3346 |
|---|
| Symbol | |
|---|
| ID | 3904132 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 3969767 |
|---|
| End bp | 3970801 |
|---|
| Gene Length | 1035 bp |
|---|
| Protein Length | 344 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637880671 |
|---|
| Product | CRISPR-associated Cas1 family protein |
|---|
| Protein accession | YP_482432 |
|---|
| Protein GI | 86742032 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1518] Uncharacterized protein predicted to be involved in DNA repair |
|---|
| TIGRFAM ID | [TIGR00287] CRISPR-associated endonuclease Cas1
[TIGR03640] CRISPR-associated endonuclease Cas1, DVULG subtype |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0114588 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.257048 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGAGC TCCTCAACAC CCTCTACGCC ACAACACCCG GAACCAGCCT GCACCTCGAC
GGCGACGCCG TACGCATCTG GCATCCCGAC AACGACAAAG GCCGCCGCCT TCTCCCCCTC
GTCCGCGTCG ATCACATCGT CGTCTTCGGC GGCGTCACCA TCACCGACGA TCTCCTACAA
CGCTGCGCCA CCGACCGCCG CTCCGTCACC TGGCTCACCG GCAACGGCCG CTTCCGCGCC
CGCGTCGAAG GACCCACCGG CGGCAACCCC CACCTACGCA TCGCCCAACA CGATCACTTC
CGCGACGACG AACGACGCCT CACTCTCGCC ATGTCATACA TAGCCGGGAA ACTCCAGAAC
AGCCGCCAAC TCCTCCTCCG CGCCGCCCGC GACGCCACCG GCACCCGCCA AACCGCACTC
CGCGACACCG CCGCCCACCT CGCCGACGCC CTCCCCACCC TGCGTGACAC CACCAACGTC
GCCGAGGCCA TGGGCGTCGA AGGACAGGCA GCCCGCCGCT ACATCGCCAC ATGGCCGCAC
CTGCTCACCC CGCACGCGAC CGTCACCGCC CCCGCCGGAC GCACCAGCCG ACCCGCCACC
GACCCGGTCA ACGCCGCCCT GTCCTTCGGC TACGGCATCC TGCGCATCGC CGTCCACGGC
GCCCTCGACC ACGTCGGCCT CGACCCCCAC ATCGGCTACC TCCACGGCAT CCGCCCCGGC
AAACCCGCCC TCGCCCTCGA CCTCATGGAA GAATTCCGCG CCCTGCTCGT CGACCGCCTC
GTCTTCACCG CCTTCAACCA GCGCCAGCTC ACCGATGCCG ACTTCGAACA CCACCCCGGC
GGCTCCTGCC AGCTCACCGA GTCCGGCCGG AAAAACTACC TCACCCTGTG GAGCCAGGCA
CGCGCCCGAA CCTGGCCCCA CACCCTCCTC ACCCACGACA CCCCCGCCGC CACCCTTCCC
CTGCTCCAGG CCAGGATCCT CGCCCGACAC CTCCGCGGCG ACATCCCCCG GTACATCCCC
TGGAGCCCTA CCTGA
|
|---|
| Protein sequence | MAELLNTLYA TTPGTSLHLD GDAVRIWHPD NDKGRRLLPL VRVDHIVVFG GVTITDDLLQ
RCATDRRSVT WLTGNGRFRA RVEGPTGGNP HLRIAQHDHF RDDERRLTLA MSYIAGKLQN
SRQLLLRAAR DATGTRQTAL RDTAAHLADA LPTLRDTTNV AEAMGVEGQA ARRYIATWPH
LLTPHATVTA PAGRTSRPAT DPVNAALSFG YGILRIAVHG ALDHVGLDPH IGYLHGIRPG
KPALALDLME EFRALLVDRL VFTAFNQRQL TDADFEHHPG GSCQLTESGR KNYLTLWSQA
RARTWPHTLL THDTPAATLP LLQARILARH LRGDIPRYIP WSPT
|
|---|
| |