| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3214 |
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| Symbol | alaS |
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| ID | 3906180 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | - |
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| Start bp | 3806499 |
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| End bp | 3809144 |
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| Gene Length | 2646 bp |
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| Protein Length | 881 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 637880538 |
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| Product | alanyl-tRNA synthetase |
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| Protein accession | YP_482300 |
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| Protein GI | 86741900 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0013] Alanyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00344] alanine--tRNA ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0063614 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACACGG CCGAGATCCG TAGCCGCTTT CTCAACCACT TCGCCCGGCG CGGGCACACC
GTCGTCCCGA GCGCCTCACT GGTGGCCCAG GATCCGACGT TGCTGCTGGT CAACGCCGGC
ATGGTGCCTT TCAAGCCCTA TTTTCTCGGG GATCTCCCGG CGCCGTGGCC GCGGGCGGCC
AGCGTGCAGA AATGTGTCCG GACGGTCGAC ATCGAGAATG TCGGGCACAC CGCGCGGCAC
GCCTCCTTCT TCCAGATGTG CGGCAACTTC TCGTTCGGCG ACTATTTCAA GGCCGAGGCG
ATCCCGTTCG CCTTCGAGCT GCTCACCGAA GGGTTCGGCT TCAAGGCCGA CGACCTGTGG
GCGACGGTCT ACCTCGACGA CGACGAGGCC GAGGGGATCT GGCGCAAGCT GCTGCCCGCC
GAGCGCATCC AGCGCCGCGG CAAGGAGGAC AACTTCTGGT CGATGGGCGT GCCCGGGCCG
TGCGGGCCGT GCAGCGAGAT CTACTTCGAC CGCGGCTGCG CCTATGGCCG TGAGGGCGGT
CCGATCGCGG ACGAGGAGCG CTACCTCGAG GTCTGGAACC TCGTCTTCAT GCAGTACGAG
CGGGGCGAGG GCGCCGGGTA CGACTATCCG ATCGAGCGTG AGTTGCCGGC CCGCAACATC
GACACCGGGA TGGGCCTGGA GCGGATGGCG ACCATCCTCC AGGGTGTCGA CAACCTCTAC
GAGATCGACA TCTCCCGGCC GGTGCTCGAC GCCGCCGGCC GGCTGACCGG GCGGCGCTAC
GGCGCGGACC CCGCCGATGA CGTGCGGTTG CGAGTGATCG CCGACCACAC CCGCACCGCC
GCGATGCTGA TCTCCGACGG CGTCGTCCCC TCCAACGAGG GGCGCGGCTA CGTGCTGCGC
CGCATGCTGC GCCGGGCGAT CCGTAACGCC CGGTTGCTCG GTGCCCACGA GCCGGTGATG
AGCGAGCTGT TCGCGGTCGT CGGGTCGGCG ATGGGGACGA TCTACCCCGA ACTGCTCGAC
AATGCCGAGA CGATCACCGG GGTCGCCGTC GCGGAGGAGC AGGCGTTCGC CGAGACGCTG
CGCACCGGTA CCACGATCTT CGACACCGCG GCGCGCCAGG CCCGATCCCT GGGCTCGACC
ACGCTGGGCG GCGAGGCGGC CTTCAAGCTG CACGACACCT ACGGCTTCCC GATCGACCTG
ACACTGGAGA TGGCCGCTGA GGCGGGCCTT TCCGTTGACG AGGCGGGTTT CCGCCGGCTG
ATGGACCGCC AGCGGCAGGC CGCGAAGGCG GACCGGGCCG CGCGGCGGAT CGGCAACGTC
GACCTGTCCG CGTTCCGGCC GATCCTGGCC CGTTCCGGCC CGACGACCTT CACCGGGTAC
GAGGAGCTCA GCCGGACCTC CGGCGTGGTG GGCCTCGTCG GCATCGCCGA CGGCGCGGGG
CTGGCGGCGG CGGGGGAGGA CACCGAGGTC GGGGTCGTGC TCGACGCGAC CCCCTTCTAC
GCCGAGAGCG GCGGCCAGGA GCCCGACCTC GGTCGGCTGC GTTTCGACGG CGGCGAGGTC
GAGGTGCTCG ACGTCCAGCG GCCCGTGCCC GACCTGGTCC TGCACCGGGT GCGGGTGCTC
GGCGGCGAGC TGCGGCTCGG CGTGGAGGTG TTCGCGGAGG TGGATGCCGA TCGTCGCCGC
GCGGTGTCCC GGTCGCACAC CGCCACCCAT CTCGTGCACA CCGCGTTCCG TCGCGCGCTG
GGCGAGGGCG CGACCCAGGC CGGTTCGCTG AACTCCCCGG GCCGGCTGCG GTTCGACTTC
CACGCCCTCG GCGCGGTGCC GCCGTCGGTG CTCGCCGACG TCGAGGACGA GATCAACGAG
GTTGCCCTGC GTGACCTGCC GGTGCGGGCT TTCGTAACCA CGCAGGAGGA GGCCCGCCGG
CTCGGCGCGA TGGCGCTGTT CGGCGAGAAG TACGGCGACG CCGTGCGGGT CGTCGACGTG
GGCGACTACG CCCGCGAGCT GTGCGGTGGC ACGCACGTCG CGAGCTCCGC GCAGCTCGGC
GCGGTGAAGC TGCTGTCGGA GGCGTCGATC TCCGCGGGCA CCCGCCGAGT CGAGGGGCTG
GTCGGCCTCG ACGCCTTCCG CTACCTGGCG CGCGAGCATC TCCTGGTGTC GCAGCTGTCC
ACCGCGCTGA AGGCCCGTCC GGATGAGCTG GTGGACCGGG TCACCGACAT CGTCGGCCGG
CTGCGCGACG CCGAGCGGGA GCTGGAACGA CTGCGGGCCG CCGCGGTACT CGCCGGGGCC
GGGGCGCTGG CCGAGGGTGC CGAGGAGGTG GCTGGCGTCG CCGTGGTCAC CGCCGAGGTG
CCCGCCGGCA CCGCCCCCGA CGACGTGCGG CTGCTGGCGC TGGACGTGCG TGGGCGGCTG
GCGGGGCGGC CCGCCGTCGT CGCCGTGGCC AAGGCCGACG GGTCGTCGAT CGTCGTGGTG
ACCGACGACG CCGCGCGCGG CCGGGGGCTG CGCGCCGGTG ACCTGGTGCG GCAGTCCTGG
GCGAGCCTGG GTGGCAAGGG TGGCGGCAAG CCGGACGTGG CCCAGGGCGG CGGGGGGAAC
CCACAGCTGG TGCCGGCGGT GTTCGCCAGG CTGCGGGGGC TGGTGGCCGA GCACGCCTCG
CGGTGA
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| Protein sequence | MDTAEIRSRF LNHFARRGHT VVPSASLVAQ DPTLLLVNAG MVPFKPYFLG DLPAPWPRAA
SVQKCVRTVD IENVGHTARH ASFFQMCGNF SFGDYFKAEA IPFAFELLTE GFGFKADDLW
ATVYLDDDEA EGIWRKLLPA ERIQRRGKED NFWSMGVPGP CGPCSEIYFD RGCAYGREGG
PIADEERYLE VWNLVFMQYE RGEGAGYDYP IERELPARNI DTGMGLERMA TILQGVDNLY
EIDISRPVLD AAGRLTGRRY GADPADDVRL RVIADHTRTA AMLISDGVVP SNEGRGYVLR
RMLRRAIRNA RLLGAHEPVM SELFAVVGSA MGTIYPELLD NAETITGVAV AEEQAFAETL
RTGTTIFDTA ARQARSLGST TLGGEAAFKL HDTYGFPIDL TLEMAAEAGL SVDEAGFRRL
MDRQRQAAKA DRAARRIGNV DLSAFRPILA RSGPTTFTGY EELSRTSGVV GLVGIADGAG
LAAAGEDTEV GVVLDATPFY AESGGQEPDL GRLRFDGGEV EVLDVQRPVP DLVLHRVRVL
GGELRLGVEV FAEVDADRRR AVSRSHTATH LVHTAFRRAL GEGATQAGSL NSPGRLRFDF
HALGAVPPSV LADVEDEINE VALRDLPVRA FVTTQEEARR LGAMALFGEK YGDAVRVVDV
GDYARELCGG THVASSAQLG AVKLLSEASI SAGTRRVEGL VGLDAFRYLA REHLLVSQLS
TALKARPDEL VDRVTDIVGR LRDAERELER LRAAAVLAGA GALAEGAEEV AGVAVVTAEV
PAGTAPDDVR LLALDVRGRL AGRPAVVAVA KADGSSIVVV TDDAARGRGL RAGDLVRQSW
ASLGGKGGGK PDVAQGGGGN PQLVPAVFAR LRGLVAEHAS R
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