| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3210 |
|---|
| Symbol | |
|---|
| ID | 3906176 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 3802872 |
|---|
| End bp | 3803528 |
|---|
| Gene Length | 657 bp |
|---|
| Protein Length | 218 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 637880534 |
|---|
| Product | peptidase A24A, prepilin type IV |
|---|
| Protein accession | YP_482296 |
|---|
| Protein GI | 86741896 |
|---|
| COG category | [N] Cell motility
[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1989] Type II secretory pathway, prepilin signal peptidase PulO and related peptidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0842795 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGTGCCGG GCGGCGCGCT CAGCACGTTG ATCGCCCTTC CTGCGCTCGC CGCCCTGCCG
TTCGGTCGCC GGATCGTGGC CGGCGTGCCG GCGCTGCCCG GGCAGGCCCC GCACCGGGAG
GCGCCCGGGG CGGCGGCGCT CGGTGCCGTG ACGGTGCTGG TCGCCGCGGC CGTGACCGTC
GCCCTGCACG ATCATCCGAG CTGGTTGCCG GCCTATGTGT ATCTGGCGGT CGTCGGGGTC
TGGCTGGCCG TGATCGATCT TCGGGTGCAC CGCCTGCCCG ACCATCTGGT ACTGCCGTCC
TATCCGGTGC TCGCCGGGCT GTTCGGCCTC GCCGCGCTGC TCACCGGCGA GCCCGGCCGT
CTGCTGCGCG CCGGGATGGC CGCGGCTGCC GTCTGGGTGA TCTTCCTGGG GGTGCATTGC
CTGCCGAGGG CGGGGCTCGG GCGCGGGGAC GTCAAGGTGT CCGGCCTGCT GGGCGGTGCG
CTGGGCTGGC TCGGCTGGCC GAGTGTGGTG TTCGGGCTGT TCGCCGGCAT CGTCCTCGGG
GGGCTCTGGG CGAGCGCGCT GCTCGTGGCG GGCCGGGTCG GCCGGCATGA CCGCATCGCC
TACGGTCCCT TTCTGCTCGC CGGGACGCTG CTCGCCGTCC TCGGTCGCGC CGGCTGA
|
|---|
| Protein sequence | MVPGGALSTL IALPALAALP FGRRIVAGVP ALPGQAPHRE APGAAALGAV TVLVAAAVTV
ALHDHPSWLP AYVYLAVVGV WLAVIDLRVH RLPDHLVLPS YPVLAGLFGL AALLTGEPGR
LLRAGMAAAA VWVIFLGVHC LPRAGLGRGD VKVSGLLGGA LGWLGWPSVV FGLFAGIVLG
GLWASALLVA GRVGRHDRIA YGPFLLAGTL LAVLGRAG
|
|---|
| |