Gene Francci3_3190 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFrancci3_3190 
Symbolfmt 
ID3903916 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. CcI3 
KingdomBacteria 
Replicon accessionNC_007777 
Strand
Start bp3779811 
End bp3780824 
Gene Length1014 bp 
Protein Length337 aa 
Translation table11 
GC content76% 
IMG OID637880514 
Productmethionyl-tRNA formyltransferase 
Protein accessionYP_482276 
Protein GI86741876 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0223] Methionyl-tRNA formyltransferase 
TIGRFAM ID[TIGR00460] methionyl-tRNA formyltransferase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000305844 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.338989 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTCTTG TTTTCGCCGG TACCCCGGCG GTGGCTCTGC CCAGCCTGCG GGCGTTGATC 
GACAGCCCGC GCCATGACGT GGTCGCGGTT GTCACCCGGC CCGATCGGCC CTCCGGGCGG
GGGCGGAAGG TGAAGCCGCC CCCCGTCCAC GTCCTGGCCG ACGAGGCCGG CATCCCGGTG
CTCAGCCCGG ACCGGCCCCG GGACCCGGAG TTCCTGGCCA CGCTCGCTGG CCTCGCGCCC
GACTGCTGCC CGGTGGTGGC CTACGGCGCG TTGCTACCGC CCGCGGCGCT CGCCATTCCC
CGCCACGGTT GGGTGAACCT GCACTTCTCC CTGCTGCCGG CCTACCGCGG GGCGGCTCCG
GTGCAGCGCA CCCTGCTCGC CGGGGACGAC CTGACCGGCG CGAGCGTCTT CCAGATCGAA
CCGGCGATGG ACTCCGGTCC GGTCTACGGT GTCCTCACCG AGCGGGTTCG GCCGACGGAC
ACCTCCGGTG ACCTGCTGGA CCGGCTCGCC GAGGCCGGCG CCGGGCTGCT GGTCGCGGTG
ATGGACGGCA TCGCCGACGG GACGGTGCGG CCCGTGGCCC AGCCCGCCGA GGGGATCTCC
TTCGCGCCGA AGCTGACCGC CGAGGAGGCC CGGATCGACT GGACGAAGCC GGCGATCGCG
GTGGATCGGC TGGCGAGGGC CGCCACTCCC GCGCCGGGAG CCTGGACGAC GTTTCGCGAC
CGGCGGCTCA AGATCGGTCC GGTGCGCCTC GGTGCGGTGT CCGGTCGGCC GGCCGGGCCG
GTAGCGCTGC CCGCCGGGCT GCCGGCGGGG GGGCTGCCGG CGGGGCAGAT CATGGTGCTC
CCCGGCGGGG ACGTGGCGGT CGGCACGGGC ACGAGCCCGG TGCTCCTCGG TGAGGTGCGT
CCCGAGGGGC GAGGCCCGAT GGCGGCCGCG GCCTGGGCCC GCGGGGTCCG GATCGCCAAG
GGGGAGACCC TCGGCGCGAT CGGCGCGATG CCGGTCAGTG GAGGAACGTC GTGA
 
Protein sequence
MRLVFAGTPA VALPSLRALI DSPRHDVVAV VTRPDRPSGR GRKVKPPPVH VLADEAGIPV 
LSPDRPRDPE FLATLAGLAP DCCPVVAYGA LLPPAALAIP RHGWVNLHFS LLPAYRGAAP
VQRTLLAGDD LTGASVFQIE PAMDSGPVYG VLTERVRPTD TSGDLLDRLA EAGAGLLVAV
MDGIADGTVR PVAQPAEGIS FAPKLTAEEA RIDWTKPAIA VDRLARAATP APGAWTTFRD
RRLKIGPVRL GAVSGRPAGP VALPAGLPAG GLPAGQIMVL PGGDVAVGTG TSPVLLGEVR
PEGRGPMAAA AWARGVRIAK GETLGAIGAM PVSGGTS