| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3149 |
|---|
| Symbol | panB |
|---|
| ID | 3903946 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 3728020 |
|---|
| End bp | 3728910 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 637880470 |
|---|
| Product | 3-methyl-2-oxobutanoate hydroxymethyltransferase |
|---|
| Protein accession | YP_482235 |
|---|
| Protein GI | 86741835 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0413] Ketopantoate hydroxymethyltransferase |
|---|
| TIGRFAM ID | [TIGR00222] 3-methyl-2-oxobutanoate hydroxymethyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.768921 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATGCTT CAGACACACC CACCCACCCG GCGCCCCACC CGGCGGACCC GGCGGCGACG
CCCTACGGCG CGCCGACCAC GCCGCCGCGG CCACTCCGGT CCCGTTTCAC AGTGCGCGAC
GTCGCCGCGG CGAAGAACCG GGGCGAGAAG TGGTCGATGC TGACCGCGTA CGACGCCACC
ACCGCCGCCG TCTTCGACGA GGCGGAGATC CCCGTCCTGC TGGTCGGGGA CTCGGCCGCC
AACGTCGTCT ACGGCTACGA CACGACCGTG CCGATCACCG TCGATGAGCT GCTGCCGCTG
GTCCGGGCGG TGGTCCGCGG AGCACCGCAC GCGATGGTCG TCGCCGATCT GCCCTTCGGG
TCGTACCAGG GGGGGCCTGC CGAGGCACTG GCGAGCGCTA CCCGCTTCCT CAAGGAGGGC
GGGGCGCACG CGGTGAAACT CGAGGGCGGT TCCCGGGTGG TCCGGGCGGT GGACGCCCTG
GTCGGCGCCG GCATCCCCGT TATCGGGCAT CTGGGGCTGA CCCCGCAGAG CATCCACACC
ATCGGGGGCT ACCGGGTCCA GGGCCGCGAC GAGGCCGGCG AGATCCTGCT GGCCGACGCG
CTGGCGCTCG AGGCGGCCGG CGCGTTCGCG GTCGTGCTCG AGGTGGTTCC CGCCGATCTG
GCCACCCGGG TGACGAAGGA GTTGCGCATC GCCACCGTGG GTATCGGAGC CGGCTCGGGA
TGCGATGCCC AGGTGCTGGT CTGGCAGGAC ATGGCCGGGC TGAGCGGCGG CCGCACGCCA
CGGTTCGTCA AGCGGTACGC GGATCTGCGC ACGATTCTCG CGGACGCCGC CCGAGCCTAC
CGCGCGGACG TCCGGGACGG CAGGTACCCG ACGATCGAGC ACAGCTACTG A
|
|---|
| Protein sequence | MDASDTPTHP APHPADPAAT PYGAPTTPPR PLRSRFTVRD VAAAKNRGEK WSMLTAYDAT
TAAVFDEAEI PVLLVGDSAA NVVYGYDTTV PITVDELLPL VRAVVRGAPH AMVVADLPFG
SYQGGPAEAL ASATRFLKEG GAHAVKLEGG SRVVRAVDAL VGAGIPVIGH LGLTPQSIHT
IGGYRVQGRD EAGEILLADA LALEAAGAFA VVLEVVPADL ATRVTKELRI ATVGIGAGSG
CDAQVLVWQD MAGLSGGRTP RFVKRYADLR TILADAARAY RADVRDGRYP TIEHSY
|
|---|
| |