Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Francci3_3042 |
Symbol | |
ID | 3904395 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. CcI3 |
Kingdom | Bacteria |
Replicon accession | NC_007777 |
Strand | - |
Start bp | 3609899 |
End bp | 3611809 |
Gene Length | 1911 bp |
Protein Length | 636 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 637880362 |
Product | acyl-CoA dehydrogenase-like |
Protein accession | YP_482128 |
Protein GI | 86741728 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1960] Acyl-CoA dehydrogenases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.699042 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGCAGG TGGGAGAACG GGAAGCGCGC AGGGTCGCCG AGGCGGCCCG GGAGGCCGAG TGGCGGCTTC CCTCGTTTGG CAAGGAGCTT TTCCTCGGTC ATCTCCGGCT CGATCTGATC TCCCCGCACC CGCGGCCGAA GGAGGGCGAC CGGCGGCGGG GGGAGGCGTT CCTGGCCCAG CTCGAGTCGT TCCTGCGGGA AACGGTGGAC CCGTTGCAGA TCGAGCGGGA CGGGCGGCTG CCCGAGCAGG TGATCGACGG GCTGCGGCGG ATAGGCGCCC TCGGCATGAA GATCCCCGAG GAGTACGGCG GACTCGGGTT GACCACCGTG TACTACAACA GGGCGCTTGA ACTGTCCAGC TCGTGGCATT CGAGCCTGCC CACGCTGCTC TCGGCGCACC AGTCGATCGG CGTGGCCGAG CCGGTCCTGG GGTTCGGTAC CGAGGAGCAG AAGCGGACGT ATCTGCCGAA GGTGGCCCGC GAGGAGATCA GCGCGTTCCT GCTGACCGAG CCCGATGTGG GCAGCGACCC GGCCCGGATG AGCAGCCAGG CGGTGCCGGT CGAGGGCGGC GCCGCCTACG AGCTGAGCGG CCGCAAGCTG TGGACCACCA ACGGTGTGAT CGCCGATCGG CTGGTGGTCA TGGCGGTCGT CCCGCGCTCG GCCGGTCATC GCGGTGGCAT CACGTGTTTC ATCGTCGACG CCCACGCACC CGGCGTGAAG GTGGAGCACC GCAACGAGTT CATGGGTCTG CGCGGCATCG AGAACGGGGT GACCAGCTTC GAGCGGGTCC GGGTCCCGGC CGCGGACCGC CTCGGGCGGG AAGGCGATGG GCTCAAGATT GCCCTGACGA CGCTGAACAC CGGCCGCCTC GCCCTGCCGG CGACCTGCGT GGGCGGCGCC AAGTACGCGC TGCGCATCGC CCGGGAATGG TCGCGGGACC GCGTCCAGTG GGGCCGGCCC ATCGGCCAGC ACGACGCCAT CGCCCAGAAG ATCGCGTTCA CGGCCGCCAC CACGTTCGGG CTGGAGGCGA TGCTGGAGCT GTCCGGCCTG ATGGCCGACG AGGGACGCGG GGACATCCGG ATCGAGGCTG CCCTGGCCAA GCTGTATGCC AGCGAGATGG CCTGGCTGAT CGCCGATGAG CTGGTCCAGA TCCGCGGCGG CCGCGGGTAC GAGACCGCCC AGTCCCTGGC CAACCGGGGG GAACGACCGG TACCGGCCGA GCAGATGCTA CGCGATCTGC GCATCAATCG GATCTTCGAA GGCTCCACCG AGATCATGCG GTTGCTCATC GCGCGGGAGG CCGTGGACAC CCACCTCGCG GTGGCCGGCG ACATCATTTC CCCGGACGCG CCGGTCGCGG CGAAGGCCCG CAGCGCCGGA CGGGCGGCTG CCTTCTACGG CCGCTGGCTG CCCGGCCTCG CCGTCGGCAG TGGGACGTCG CCGCGCTCGT TCCTCGAATT CGGCCGGCTC AGCACGCACC TGCGCTTCGT GGAGCGCTCG GCGCGCAAGC TCGCCCGGTC GACCTTCTAC GGGATGGCTC GCTGGCAGGG CGGGCTGGAG AAGAAGCAGG CGTTCCTCGG GCGTCTCGTC GACATCGGCG CCGAACTGTT CGCCATCAGC GCGGCGGTCG TGCGGGCCCG GATGCTCGAC GAGGAGGGCG AGCCGACCGC GACCGACCTG GCCGACCTGT TCTGCCGGCA GGCGCGACGC CGGGTCGAGG CGTCCTTCGC GGCGCTGTGG CGCAACGACG ACGCCCGCAA CTACACGGCG GCGCAGGAGG TGCTCGCGGG CCGCTTCAGC TGGGCCGAGT CCGGCGTGAT GGACCCGAGC GGCGAAGGGC CGTTCCTCGC CGCGGAGCGG CAGCGGGCGG TCCCGACTCG ACCGGCCGTC GACCTGCTCG CCGCGGGCTG A
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Protein sequence | MAQVGEREAR RVAEAAREAE WRLPSFGKEL FLGHLRLDLI SPHPRPKEGD RRRGEAFLAQ LESFLRETVD PLQIERDGRL PEQVIDGLRR IGALGMKIPE EYGGLGLTTV YYNRALELSS SWHSSLPTLL SAHQSIGVAE PVLGFGTEEQ KRTYLPKVAR EEISAFLLTE PDVGSDPARM SSQAVPVEGG AAYELSGRKL WTTNGVIADR LVVMAVVPRS AGHRGGITCF IVDAHAPGVK VEHRNEFMGL RGIENGVTSF ERVRVPAADR LGREGDGLKI ALTTLNTGRL ALPATCVGGA KYALRIAREW SRDRVQWGRP IGQHDAIAQK IAFTAATTFG LEAMLELSGL MADEGRGDIR IEAALAKLYA SEMAWLIADE LVQIRGGRGY ETAQSLANRG ERPVPAEQML RDLRINRIFE GSTEIMRLLI AREAVDTHLA VAGDIISPDA PVAAKARSAG RAAAFYGRWL PGLAVGSGTS PRSFLEFGRL STHLRFVERS ARKLARSTFY GMARWQGGLE KKQAFLGRLV DIGAELFAIS AAVVRARMLD EEGEPTATDL ADLFCRQARR RVEASFAALW RNDDARNYTA AQEVLAGRFS WAESGVMDPS GEGPFLAAER QRAVPTRPAV DLLAAG
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