| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_2867 |
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| Symbol | |
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| ID | 3905998 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | + |
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| Start bp | 3380103 |
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| End bp | 3381692 |
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| Gene Length | 1590 bp |
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| Protein Length | 529 aa |
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| Translation table | 11 |
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| GC content | 76% |
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| IMG OID | 637880188 |
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| Product | pyridoxal-dependent decarboxylase |
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| Protein accession | YP_481954 |
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| Protein GI | 86741554 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.121962 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGAGGCA TGCCGCCCGT TGACGCGCTC CGCGCGGCAC TGCGCGCCGC CGCCGGGCAT
GCCGACGCCT ACCTGGCGGG TCTGGCCGAT CGTCGGGTCG GCCCCAGCCT GACCGCCGAG
CAGGTCCGCC GCCGGCTCGG CGACACGCTG CCGGCAGGCC CGAGCGACCC GGTGGCGGTC
ATCGACGCCC TGGTCGACGC GGTGGCCGGC GGCCTCACCG CGACCGGCTC GGGCCGCTTC
TTCGGCTACG TCGTCGGCGG GACCCTGCCG GCGGCGCTCG CCGCCGACCT GCTCACCGTC
GTGTGGGACC AGAACGCCGC CCTGGCCTCC CTCTCCCCGG CCGCCAGCGC CGTCGAGGCG
CTGACCGGCC GCTGGATCGC GCAACTGCTC GGCCTGCCGT CGGGGGTGTC CGTCGGGTTC
ACCACCGGCA CCCAGATGGC GCACGTGACC GCCCTGGCGG CCGCACGGCA CCGGGTGCTG
GCGCGGGCCG GCTGGGATGT CGAGACGGAC GGTCTCGCCG GGGCGCCGCC CGTGCGGGTC
CTGGTCGGTG CCGCCCGGCA CGCCACCGTC GACGCCGCGT TGCGCCTGCT CGGATTCGGC
ACCCGCGCGA CGATCGCCGT CGAGGCCGAC GAACTCGGGC GGATGCGCCC CGAGGCGCTG
CGGGCGGCCC TTGCCGACGA GAGCGGCGGG AGCGGGCCGA CGATCGTGAT CGCCCAGGCG
GGGGAGGTCA ACACCGGCGG GTTCGACCCC TTCGAGGAGG TGTGCGCGCT GGCCCGCGAA
CACGGCGCCT GGGTACACGT GGACGGTGCG TTCGGGCTGT GGGCGGCGGT GTCGGCGGCG
GCGTCCCGGC GCGCCCTCGT CGCCGGGGTC GAGCGGGCCG ACTCGTGGGC GACCGACGGC
CACAAGTGGC TCAACGTCCC GTACGACTGC GGGATCGCGC TCATCGCGGA CCGCGAGGCG
CACCGGCGGT CGATGTCGGT CTCGGCGGAT TACTTCGTCC TCGACTCCGC CGGCCGGCTC
GACCCGGTCG ACTGGACACC GGAGTTCAGC CGCCGGGCAC GGGCCTTCGC CGTATACGCG
GCGCTGCGCT CGCTCGGCCG GGCGGGGCTG CGCGATCTGG TGGACCGGTG CTGCGAGTAT
GCCAACCGCT TCGCCGTGCG GCTCGCCGCT CTTCCCGGGG TGACGGTGCT GAACTCGGTG
GCCGGCCCAG CCGGGTCAGC CGGGTCAGCC GGCCCGGGCC GCGTCGTGGA GCTCAACCAG
GTGCTGATCC GGGTGGTGGC AGACCAGGAG GGCGACCGGA CGGCGGCCGG GCGGGCGGAG
GGCGACCGGC TGACGGCGGC GGTCACGGCC GCGGTGACGG CGAGCGGCGA GGCGTTCGTG
AGCGGCACGG TGTGGCGGGG GCGCACGGCG ATGCGCATCT CGGTAAGCAA CTGGTCGACC
TCGGACGGCG AGGTGGAGCG GACGATCGCG GTGATCGAGG CCGCCGTCGC CGAGGCGCGG
GGGACGACCG TGCGGGGGAC GACCGTGCGG GGGACGACCG TGGCGGCGCC GAGCGGCGGC
GGTACGCACC GCGGCGGTAT CGCTTCGTAG
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| Protein sequence | MRGMPPVDAL RAALRAAAGH ADAYLAGLAD RRVGPSLTAE QVRRRLGDTL PAGPSDPVAV
IDALVDAVAG GLTATGSGRF FGYVVGGTLP AALAADLLTV VWDQNAALAS LSPAASAVEA
LTGRWIAQLL GLPSGVSVGF TTGTQMAHVT ALAAARHRVL ARAGWDVETD GLAGAPPVRV
LVGAARHATV DAALRLLGFG TRATIAVEAD ELGRMRPEAL RAALADESGG SGPTIVIAQA
GEVNTGGFDP FEEVCALARE HGAWVHVDGA FGLWAAVSAA ASRRALVAGV ERADSWATDG
HKWLNVPYDC GIALIADREA HRRSMSVSAD YFVLDSAGRL DPVDWTPEFS RRARAFAVYA
ALRSLGRAGL RDLVDRCCEY ANRFAVRLAA LPGVTVLNSV AGPAGSAGSA GPGRVVELNQ
VLIRVVADQE GDRTAAGRAE GDRLTAAVTA AVTASGEAFV SGTVWRGRTA MRISVSNWST
SDGEVERTIA VIEAAVAEAR GTTVRGTTVR GTTVAAPSGG GTHRGGIAS
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