| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_2845 |
|---|
| Symbol | |
|---|
| ID | 3904757 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 3352783 |
|---|
| End bp | 3357354 |
|---|
| Gene Length | 4572 bp |
|---|
| Protein Length | 1523 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 637880166 |
|---|
| Product | DNA helicase, putative |
|---|
| Protein accession | YP_481932 |
|---|
| Protein GI | 86741532 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1112] Superfamily I DNA and RNA helicases and helicase subunits |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.914274 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGCTC GTGATCAGGT CCGTGGCCGG TCGCTTCGGC TCCTGGACTA CCTGGCCGCG
CTCGCCGCCG AACGGCGCGG TGCCCCCCGT CGCCAGCTCG CCGAGTACGT CCCCGCTCCG
CTCCTTCCGG CTGACGTCCC GTCCCATCCG GGGGTCCGGC TCGGCCCGAC AACGCAGCGG
GAGAGCTGGC TGGAGGTCGC CCGGGTACCC CAGCCGGCCG CGCCGAGCTG GCCACCCCCG
CTCGACCGCT ACCTGGCCGG GACGGTGGTG AGCCCGGACG CCCCACCCAC CATCCCCGCC
CATCTCCTGG ACGCGGAGGC CGTCGAGCAG ACCGGGGAGC GCGAGCCTCC CGGTGTCCCG
GGCGAGGAGC GGGACGCTCC GCCGGGCGCC GTCGCACTGC TCGACGCCTG GGTGCGTCAG
GTGTGGCGGC CGTGGGCGCC CGAGGCACGC GCCGCCCGCG ACGCGCGCGC CCTCTACCAG
CGCCTGTTCG ACCTGCGCCT GCGGCTGCAG CGCGAGGCCG CGACCGTGGA GCTGGCCTGG
GGGCACTCGG TGCTGTGCTG GCGGGTCGGC GACGCGACGA TCATCCATCC GCTGCTCGTC
ACCCGCATGG TGCTGACGGT CGATCCGGAC TCCGGGGTCA TCCGGCTGCA TCCCGACGGT
CCGGTGAGCC TGGAGACCGA GCCCCTGCAC GGCCTCGGCC TCCCCGGTCT GGACGAGATG
TCGGCCCTGC GCGACCGGCT GCGGACGGCG CCGGCCGATC CGTGGGACGC CCCGGCCCAG
GCCGAGCTGC ACCGCCAGAT CCTCGCGCCG CTCGGGCTGG ACGCCCGCGC GACCACCGGT
CCGGTGCCCC CGCCGGGGCC GAGCCCCGTC CTGGTCGACA CCTGGGCGGT GTACGTGCGG
CCGCGGCCGG CCCTGCAGGC GCAGTTCTAC GCGGAGCTGC GGACCGCCCT CGCCGAACGG
GACCTGCTCC CCGAGGCCAT CGCCGCCGTG GTCGCCGACG ACAGGCTCGT CGCCGCCGCG
CTCGGCGGGG ACGATCGGGC CGACGGCACC CTCCCCGAGG GTGCCCACGC CGATCGAGGC
CGTGGCCGGC GCGGTCACGA CGGCTCCCCC GCGGGGCTCG GTGAACGCCT GCTGATGCCG
CTGCCGACGA ACGCCGACCA GGAGCGGATC GCCCGGCAGC TCGCGGGCGC CCGCGGAGTC
ACCGTGCAAG GGCCGCCCGG CACCGGTAAG AGCCACACCA TCGCGAACAT GATCTGCCAC
CTCGTGGCGC ATGGGCAGCG GGTGCTCGTC ACCGCGCAGG ACGAACAGGC CCTCGCGGTG
CTGCGCGACA AGATCCCGCG GGAGCTGCGC GACCTGACCG TCGCCGTGCT CGGGTCGAGC
CGGGCCGACC TCGACGAACT GCGCGCCGCC ATCGTGGAGA TCTCCGGGGC GGTCAGCGAG
GTCGACCCGG CGCGGGAGAC CGCGGCCGTG AAGGCCCTCG CCGAGGAGCT GGACGCCGCC
CGCGCCACCG CCCGCGCCCT CGAACTGCGG ATGATCGACC TGCTGGCCGG CGAGGCGCGG
GAGTTCGAGC TGCCGCACGG GCGGGAACGC GCGCCGGAGG TGGCGAGCTG GCTGGCCGAG
CGCGCGGAGG AGCTCGGGTT CGTTCCCGAC CGGCTCGACC CCACCCGCGC GCTTCCGCTC
GGCCCGGCCG AGCTCGCCGA GCTCTACCGG ACCGCGCGCG AGATCACCCC CGCCGACGCC
CGGGCCGCCG CGGGCAATCT GCCGGGCGAC CTGCCGGACG GCGCGTCGCT GCCGGGCGCG
GTCGCCCTCG GCCGGCTGCA CGACGAACTC GACGAGATCC GCGCCGGGCT CGCCGACCTC
GAACAGGCCG GCCTGTCCGT CGACGCGCTC GACGCGCTCG ACGTCGACGG TGCCGACGGT
GCCGACGGCG TCCGTGCCCT GGTCGAGGAC ACCCGGGCCG CCGCCGACCG GCTGCGCCGG
CTGTCGGTCG GCTGGCTCAC CACCGCCCGG GCGCAGTGCG CGGCGTCGGG TGAGCAGGCC
AGGTTCTGGG CCGACCAGGC CACGGCCCTC GCCGCCGAGG TCGCCGAGCT GCGCCGTCTG
ACCACCCTCA CCTTCGGCCG TTCCATCGAG CTGCCCGCCG GTGACCCGCG GGTCCAGCTG
AGGCTGCTCG CCGACCTGCG GGGCCGCTTC GCCGCCGGCC GGGGGATCCC CCGCCTCGGC
GGACGGGAGC TGCGGGACCT GCACGACGCG GTGCGCGTCG ATGGGCTGGC CGCGCGCACG
GGGGAGGACG TGGCAATCGT CGAGGCAGAG GTGCGCCGCC GTCAGACGCT GGCAGCCGCC
GCCGCCCGTC AGGCCGCGAT CGCCGCCGCC CTCGGCGGTG AGGCCATCGA GCCCGCGGCA
CCCGACGTCC TCACCCGGCT CGACGCGGTC GCCGGCGGCC TCGCCGACGC CGTCGACTGG
GAACGCCGGG CGGCACCGGA GCTGTCCGCC CGGCTGCGCG CTGTCTTCCC CGCCGGCCAT
CCCGCCGGCC ATCCCACCGG CCATCCCGTC ACGACGACGC CTTCCGACCC GGACACGCTT
TCCCACCTCG CCGGCCTGCT TGCCACGGCG ACCGGCCGAC GGCGCGAGAA GGAGATCGCC
GGCGCGCTCG CCGAGGTAGA ACGGGCGCTC GCCGAGGGAG GCCGTAGCCC GCGGGCCGGC
CGGGTGTGGG CCGACCTGCA CGAGGCGCTG ACCAGGCGGG ACCTGGCGAC ATGGACGGCG
CTGCTCGACG AGAGCGCCCG GCTGGCGGCG CTGCGCCCCG GCGTGGAACG CCGGGACCGG
CTGGCGGCCC GGCTGCGCGC GGTCGCGCCG CTGTGGACCG ACGCCATCCT CACCGGACAG
GGTGACCCGT CGAGCTGCGG CGAGGCGGTG CGGGCCAGCG AGGCGTGGCG CTGGCGCCAG
GCCCAGACCT GGCTCGACGA CCTGCACTCC GACGGCGACC TCACCACGCT CGGCCGTCAG
CTCGCCGACG CCTCGCGGCA CGTGCGCGCC CTGGTGCTGG AGACTGCGCG TCGCTCCGCC
CGGCTGGGCC TGGCGATCCG GCTCGGCGAC TCCCAGCGCC GGGCGCTGAC CGGCTGGGTA
CAGGCACTCG ACCGGATCGG GAAGGGCACC GGGAAGTACG CCCCGCGGTG GCGCGCCGAG
GCCCGGGCCC ACATGCGGGC GGCGATGGGC GCCGTGCCGG TGTGGATCAT GCCGACGCAC
CGGGTGATGG AGAGCTTCGA CCCGGGCGCC GACGACCTGT TCGACGTGGT CATCGTGGAC
GAGTCCAGCC AGTGCGACCT GCTGGCCCTC GGCGTGCTGA GCCTGGCCCG CAAGGCTGTC
GTCGTCGGCG ACGACGCCCA GACGAGTCCG GAGGCCGTCG GCATCGAACG GGCCAAGGTT
CATGCCCTGA TCGACGCGCA CCTGCCCGAC GTCGCCCAGC GTTCGCTGCT CGACGTGGAG
GCGAGTCTCT ACGACACCGC GGCCCGGGTC TTCCCGCGCA CCATCGTGCT CAAGGAGCAC
TTCCGCTGCC TGCCCGACAT CATCGGCTTC TCCAACCGCT TCTACGACCA GCAGATCCTG
CCGTTGCGGG AGGATCCGGA GCTCGCCCTC GGCGCGCCGC TGCGACCCGT CCGGGTCCCC
CGGGGCGCCC GGTCGCAGAC CCGCTTCGGC GACGCGAACC CAGCGGAGGC GCAGGCCCTC
GTCGAGCGGG TCCTCGCCTG CTGCGCCGAC CCGGCCTACG ACGGGATGAG CATGGGCGTG
GTCACCCTGC TCGGCGCCGG CCAGCCCCGC CTCATCGAAC ACACCCTAGT CGAACGGCTC
GGGGAGCGCG AGTTCTCCCG CCGCGACCTG CGGGTCGGCG ACCCGTACCA GTTCCAGGGC
GACGAACGGG ACGTCATCTT CATCTCCGTC GTCGCGGACG ACAACCGCTC GGCCGCCACC
CGCCGCCGCG ACCAGCAACG AGTCAACGTG GCCGCGAGCC GCGCCCGCAA CCAGATGTGG
GTGTTCCACA GCGTCGACCC GGCCACGCTG CGCGACGACG ATGTGCGGCG CCAGCTGATC
GAGTACATGT ACGCCGGGCA GACCGGACGG CTCGACGCGG ATCTGGCCGA TCGCTGCGAG
AGCGAGTTCG AACGGGCCGT CCTGCGCGAG CTCCTCGCCC GCGGCTACCG GGTGCGCCCC
CAGCATCCGG TCGGGCGCTA CCGGATCGAC CTGGTCGTCG AAGGGGTCGC CACCACGCGA
GCCACCGCCG AGCAAGCCGT CACCGAAGGA GCCACCGCCG GGGGTGTGGG GCGCCGCGGC
CCCCGCCTCG CGGTCGAATG CGACGGTGAC CGTTTCCACG GGCCCGACCA GTGGGAGGCG
GATCTGCGCC GCCAGCGGAT CCTGGAACGG CTCGGCTGGA CGTTCTTCCG GATCCGCGGC
TCGGAGTTCT ACCGGCATCC TCGGCCGACC CTGGAGGCGC TGGTGCGACG TCTCGACCAG
CTCGGCATCC ACCCGGTGCC GGTGCCAGCA CCAGCACCAG CACCAGCCGG CTCGCCGACG
GAAGGGCCCT GA
|
|---|
| Protein sequence | MSARDQVRGR SLRLLDYLAA LAAERRGAPR RQLAEYVPAP LLPADVPSHP GVRLGPTTQR
ESWLEVARVP QPAAPSWPPP LDRYLAGTVV SPDAPPTIPA HLLDAEAVEQ TGEREPPGVP
GEERDAPPGA VALLDAWVRQ VWRPWAPEAR AARDARALYQ RLFDLRLRLQ REAATVELAW
GHSVLCWRVG DATIIHPLLV TRMVLTVDPD SGVIRLHPDG PVSLETEPLH GLGLPGLDEM
SALRDRLRTA PADPWDAPAQ AELHRQILAP LGLDARATTG PVPPPGPSPV LVDTWAVYVR
PRPALQAQFY AELRTALAER DLLPEAIAAV VADDRLVAAA LGGDDRADGT LPEGAHADRG
RGRRGHDGSP AGLGERLLMP LPTNADQERI ARQLAGARGV TVQGPPGTGK SHTIANMICH
LVAHGQRVLV TAQDEQALAV LRDKIPRELR DLTVAVLGSS RADLDELRAA IVEISGAVSE
VDPARETAAV KALAEELDAA RATARALELR MIDLLAGEAR EFELPHGRER APEVASWLAE
RAEELGFVPD RLDPTRALPL GPAELAELYR TAREITPADA RAAAGNLPGD LPDGASLPGA
VALGRLHDEL DEIRAGLADL EQAGLSVDAL DALDVDGADG ADGVRALVED TRAAADRLRR
LSVGWLTTAR AQCAASGEQA RFWADQATAL AAEVAELRRL TTLTFGRSIE LPAGDPRVQL
RLLADLRGRF AAGRGIPRLG GRELRDLHDA VRVDGLAART GEDVAIVEAE VRRRQTLAAA
AARQAAIAAA LGGEAIEPAA PDVLTRLDAV AGGLADAVDW ERRAAPELSA RLRAVFPAGH
PAGHPTGHPV TTTPSDPDTL SHLAGLLATA TGRRREKEIA GALAEVERAL AEGGRSPRAG
RVWADLHEAL TRRDLATWTA LLDESARLAA LRPGVERRDR LAARLRAVAP LWTDAILTGQ
GDPSSCGEAV RASEAWRWRQ AQTWLDDLHS DGDLTTLGRQ LADASRHVRA LVLETARRSA
RLGLAIRLGD SQRRALTGWV QALDRIGKGT GKYAPRWRAE ARAHMRAAMG AVPVWIMPTH
RVMESFDPGA DDLFDVVIVD ESSQCDLLAL GVLSLARKAV VVGDDAQTSP EAVGIERAKV
HALIDAHLPD VAQRSLLDVE ASLYDTAARV FPRTIVLKEH FRCLPDIIGF SNRFYDQQIL
PLREDPELAL GAPLRPVRVP RGARSQTRFG DANPAEAQAL VERVLACCAD PAYDGMSMGV
VTLLGAGQPR LIEHTLVERL GEREFSRRDL RVGDPYQFQG DERDVIFISV VADDNRSAAT
RRRDQQRVNV AASRARNQMW VFHSVDPATL RDDDVRRQLI EYMYAGQTGR LDADLADRCE
SEFERAVLRE LLARGYRVRP QHPVGRYRID LVVEGVATTR ATAEQAVTEG ATAGGVGRRG
PRLAVECDGD RFHGPDQWEA DLRRQRILER LGWTFFRIRG SEFYRHPRPT LEALVRRLDQ
LGIHPVPVPA PAPAPAGSPT EGP
|
|---|
| |