| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_2711 |
|---|
| Symbol | |
|---|
| ID | 3904701 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 3195913 |
|---|
| End bp | 3197244 |
|---|
| Gene Length | 1332 bp |
|---|
| Protein Length | 443 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637880035 |
|---|
| Product | pyridoxal-dependent decarboxylase |
|---|
| Protein accession | YP_481801 |
|---|
| Protein GI | 86741401 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.434968 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCGGAGC CCTGGCTGCC TCTGTGCAAG AACGAGGCGA GTCCACGCTT CCTGGGCTTC
GGGGATACAG GCGACGACGT TGCCGCGCTC GCGGGCGGCG TGCTCGCGCT GTTCACCCAG
CAGAACCTGA TCAACCAGAG CTTCGACTCG CCGAGCGCCA CCTTCATCGA GATCACCGTC
TTGCGGTGGC TGCGCGAGTT GCTCGGCTTC ACCAACCCTC CCGTGCAGGA TGTGATGACG
GTGTGGGATG TCGGTGGTGT CATCGCCCAT GGCGGGACGA TGAGCAACAC GGTCGCGATG
ATGCTGGCCC GAGAGCACGC GGCGCCTGGC ACGATGGAAT GTGGTGTGAC CGACCCCGGC
AGATTCGCGA TCGTCGTTCC CCGTGGTATC GGTCATTACA GTGTGAAGAG CGCGCTGGCG
TGGATTGGCG CTGGTAGCCA GTTGATCGAG GTCGACACTG CGGGTTTCCG CTACGACCTG
GCGAAATTGG AACGGGCTCT TGCGGAGAAC CAGGGCCGAG TGATGGCTGT GGTGGCCTAC
GCCGGCGACA GTCGCACTCA GACGATCGAG AACCTCCAAG GCGTGCACGA TGTCACCCGC
GCGGCCGACG AACGGATCTG GCTGCACGCA GATGCCTGCT GGGGGCTGCT CTGCGCATTC
AGCGATCACC TCCGTCACAA GATTGCTGGA ATTTCCGGGT TTGACAGCGT GACGGTGGAC
CCGCACAAGG TCATGGCCGT GCCCCATGCG CTGTCCGCGT TGCTGGTGCG CACGCCAGCA
AGCCTGCGAA CGATCGCCAG CTACTCGGAT CTGATCATGC AGGAGGATTT CGCGTTCGGG
CAGGTGACGC CGTTTGTCGG TACCAAGGGT TGGCTGTCGT TGAAGTTGTG GATGCTGATG
CGCACGCACG GCAGAACAGG GCTCGCGGCG ATGGCTGAGA AGCGGGTTGC GAACGCGCAG
CGGTTCGCCG CGCTGGTCGA TGCCTGTCCG CGGACGATTC GACTGCATGA GCCGGACCTG
CTCGCGGTCG CGTTCCTCTA CCTACCGGTC AGCTATGCCA ACGCTACCGA TCATGTCTCC
GCCATCGAGC TGGTCAACCA TGCCAACCGA TGGATCCACG AGCGGATGCT GGCCGAAGGT
ATCTGGCATC TGCATCAGTT CAGCATCCGC GACGACGCGG GGATCCTACG CAAGGGCGCC
ACCGTCTATC CGCTGCGATT CATGGCAGCC AACCCCCATA TCGAGGCCGA GCATATGACC
GGTGTCCTTG ACCACGCCGT CGCGCTGGGA CAGGCGTGGG AAGCCAGCGA GCACGCTGAG
GACCGGGCAT GA
|
|---|
| Protein sequence | MPEPWLPLCK NEASPRFLGF GDTGDDVAAL AGGVLALFTQ QNLINQSFDS PSATFIEITV
LRWLRELLGF TNPPVQDVMT VWDVGGVIAH GGTMSNTVAM MLAREHAAPG TMECGVTDPG
RFAIVVPRGI GHYSVKSALA WIGAGSQLIE VDTAGFRYDL AKLERALAEN QGRVMAVVAY
AGDSRTQTIE NLQGVHDVTR AADERIWLHA DACWGLLCAF SDHLRHKIAG ISGFDSVTVD
PHKVMAVPHA LSALLVRTPA SLRTIASYSD LIMQEDFAFG QVTPFVGTKG WLSLKLWMLM
RTHGRTGLAA MAEKRVANAQ RFAALVDACP RTIRLHEPDL LAVAFLYLPV SYANATDHVS
AIELVNHANR WIHERMLAEG IWHLHQFSIR DDAGILRKGA TVYPLRFMAA NPHIEAEHMT
GVLDHAVALG QAWEASEHAE DRA
|
|---|
| |